Table 1 Plasmids and genomic islands detected in the 73 S. Typhi isolates. The resistance genes present in these elements are listed
| Â | Name | Size range (bp) or location | Number | Resistance genes |
|---|---|---|---|---|
Plasmids | pHCM1 | 214,596 - 218,627 | 20 | bla TEM-1 ; catA1; strA; strB; sul1; sul2; dfrA7; qacEΔ1 |
pHCM2 | 106,706 - 106,706 | 21 | – | |
pK43 | 43,427 | 1 | – | |
pPRJEB21992 | 88,544 | 1 | bla TEM-1 ; bla CTX-M-15 | |
pK91 | 91,848 - 93,445 | 7 | bla TEM-1 ; sul2; qnrS1; tetA; tetR | |
Genomic Islands | SGI11 | yidA | 8 | bla TEM-1 ; catA1; strA; strB; sul1; sul2; dfrA7; qacEΔ1 |
SGI11b | yidA | 9 | catA1; sul1; dfrA7; qacEΔ1 | |
SGI11c | yidA | 1 | bla TEM-1 ; strA; strB; sul1; sul2; dfrA7; qacEΔ1 | |
SGI11d | yidA | 1 | bla TEM-1 ; strA; strB; sul2 | |
SGI11e | cyaY-cyaA | 2 | bla TEM-1 ; catA1; sul1; dfrA7; qacEΔ1 |