Table 3 Categorization of DEGs on the basis of KEGG analysis
Light condition (75 μmol m − 2 s − 1) | Total no. of genes | No. of genes identified by KEGG | Major pathways involved | No. of genes in each pathway |
|---|---|---|---|---|
150 vs 112 | 1014 | 184 | Metabolic pathway | 71 |
Secondary metabolite biosynthesis | 40 | |||
Plant hormone signal transduction | 19 | |||
Protein processing in ER | 15 | |||
MAPK signaling | 11 | |||
Carbon metabolism | 11 | |||
150 vs 75 | 1424 | 290 | Metabolic pathway | 143 |
Secondary metabolite synthesis | 82 | |||
Carbon metabolism | 24 | |||
Amino acid biosynthesis | 19 | |||
Glycolysis | 15 | |||
Plant-pathogen interaction | 13 | |||
Glutathione metabolism | 13 | |||
RNA transport | 13 | |||
Starch and sucrose metabolism | 13 | |||
Oxidative phosphorylation | 12 | |||
Purine metabolism | 12 | |||
Amino sugar and nucleotide sugar metabolism | 10 | |||
Plant hormone signal transduction | 10 | |||
150 vs 38 | 1789 | 420 | Metabolic pathway | 79 |
Secondary metabolite biosynthesis | 114 | |||
Ribosome | 51 | |||
Carbon metabolism | 27 | |||
Amino acid biosynthesis | 25 | |||
Oxidative phosphorylation | 21 | |||
Phenylpropanoid biosynthesis pathway | 20 | |||
RNA transport | 17 | |||
Starch and sucrose metabolism | 17 | |||
Spliceosome | 17 | |||
Plant-pathogen interaction | 17 | |||
Glutathione metabolism | 16 | |||
Plant hormone signal transduction | 15 | |||
Endocytosis | 13 | |||
Glycine, serine and threonine metabolism | 13 | |||
Glycolysis | 13 | |||
Purine metabolism | 12 | |||
Amino sugar and nucleotide sugar metabolism | 12 | |||
Cysteine and methionine metabolism | 11 | |||
2-oxocarboxylic acid metabolism | 10 | |||
Protein processing in ER | 10 | |||
Ubiquitin mediated proteolysis | 10 | |||
Photosynthesis | 10 | |||
112 vs 75 | 1163 | 249 | Metabolic pathway | 122 |
Biosynthesis of secondary metabolites | 63 | |||
Carbon metabolism | 18 | |||
Starch and sucrose metabolism | 15 | |||
Plant hormone signal transduction | 14 | |||
Amino acid biosynthesis | 12 | |||
Protein processing in the ER | 11 | |||
Phenylpropanoid biosynthesis pathway | 10 | |||
112 vs 38 | 1518 | 314 | Metabolic pathway | 131 |
Secondary metabolite biosynthesis | 59 | |||
Ribosome | 30 | |||
Plant hormone signal transduction | 27 | |||
Carbon metabolism | 22 | |||
Oxidative phosphorylation | 18 | |||
Protein processing in ER | 13 | |||
MAPK signaling | 13 | |||
Spliceosome | 12 | |||
Purine metabolism | 12 | |||
Glyoxylate and dicarboxylate metabolism | 11 | |||
Amino acid biosynthesis pathway | 10 | |||
75 vs 38 | 1047 | 172 | Metabolic pathway | 64 |
Biosynthesis of secondary metabolite | 37 | |||
Plant hormone signaling | 10 | |||
Plant-pathogen interaction | 10 |