Skip to main content

Advertisement

Table 3 Categorization of DEGs on the basis of KEGG analysis

From: Uncovering the molecular signature underlying the light intensity-dependent root development in Arabidopsis thaliana

Light condition (75 μmol m 21) Total no. of genes No. of genes identified by KEGG Major pathways involved No. of genes in each pathway
150 vs 112 1014 184 Metabolic pathway 71
Secondary metabolite biosynthesis 40
Plant hormone signal transduction 19
Protein processing in ER 15
MAPK signaling 11
Carbon metabolism 11
150 vs 75 1424 290 Metabolic pathway 143
Secondary metabolite synthesis 82
Carbon metabolism 24
Amino acid biosynthesis 19
Glycolysis 15
Plant-pathogen interaction 13
Glutathione metabolism 13
RNA transport 13
Starch and sucrose metabolism 13
Oxidative phosphorylation 12
Purine metabolism 12
Amino sugar and nucleotide sugar metabolism 10
Plant hormone signal transduction 10
150 vs 38 1789 420 Metabolic pathway 79
Secondary metabolite biosynthesis 114
Ribosome 51
Carbon metabolism 27
Amino acid biosynthesis 25
Oxidative phosphorylation 21
Phenylpropanoid biosynthesis pathway 20
RNA transport 17
Starch and sucrose metabolism 17
Spliceosome 17
Plant-pathogen interaction 17
Glutathione metabolism 16
Plant hormone signal transduction 15
Endocytosis 13
Glycine, serine and threonine metabolism 13
Glycolysis 13
Purine metabolism 12
Amino sugar and nucleotide sugar metabolism 12
Cysteine and methionine metabolism 11
2-oxocarboxylic acid metabolism 10
Protein processing in ER 10
Ubiquitin mediated proteolysis 10
Photosynthesis 10
112 vs 75 1163 249 Metabolic pathway 122
Biosynthesis of secondary metabolites 63
Carbon metabolism 18
Starch and sucrose metabolism 15
Plant hormone signal transduction 14
Amino acid biosynthesis 12
Protein processing in the ER 11
Phenylpropanoid biosynthesis pathway 10
112 vs 38 1518 314 Metabolic pathway 131
Secondary metabolite biosynthesis 59
Ribosome 30
Plant hormone signal transduction 27
Carbon metabolism 22
Oxidative phosphorylation 18
Protein processing in ER 13
MAPK signaling 13
Spliceosome 12
Purine metabolism 12
Glyoxylate and dicarboxylate metabolism 11
Amino acid biosynthesis pathway 10
75 vs 38 1047 172 Metabolic pathway 64
Biosynthesis of secondary metabolite 37
Plant hormone signaling 10
Plant-pathogen interaction 10