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Table 2 Top five loci associated with heifer conception rate to repeated AI services (TBRD)

From: Validation of 46 loci associated with female fertility traits in cattle

BTAa

BP Positionb

SNP IDc

Modeld

P-valuee

1

3,546,098 (4,253,950)

rs136767715

Dominant

1.56 × 10− 26

1

14,740,447 (15,273,288)

rs109845303

Recessive

3.55 × 10−14

1

69,793,194 (69,188,246)

rs137088827

Recessive

3.57 × 10−17

4

37,235,676 (37,056,340)

rs133417267

Additive

4.23 × 10− 21

5

27,837,406 (27,683,283)

rs134147281

Recessive

6.66 × 10−15

10

59,882,200 (59,695,958)

rs110617366

Additive, Dominant

1.17 × 10−20, 1.57 × 10−27

18

21,929,721 (21,851,964)

rs41872094

Additive, Dominant

2.15 × 10−19, 6.27 × 10−29

20

57,113,135 (57,038,642)

rs41956232

Additive, Dominant

3.76 × 10−19, 4.81 × 10−26

24

50,503,943 (50,038,623)

rs110770205

Recessive

3.46 × 10−16

25

4,169,181 (4,151,257)

rs110089590

Recessive

1.76 × 10−14

27

21,375,791 (22,307,598)

rs132728892

Additive, Dominant

9.10 × 10−40, 9.10 × 10− 40

  1. a Chromosome location of the locus
  2. b Single nucleotide polymorphism (SNP) location as measured by numbered nucleotides in reference to the UMD 3.1 genome assembly (http://bovinegenome.org/?q=node/61; accessed 15 September 2016) or the ARS-UCD 1.2 genome assembly (https://www.animalgenome.org/repository/cattle/UMC_bovine_coordinates/; accessed 19 September 2018) in parentheses
  3. c The most significant SNP in the locus associated with heifer conception rate as identified by rs number which is a reference number assigned to markers submitted to the National Center for Biotechnology Information SNP database (https://www.ncbi.nlm.nih.gov/projects/SNP/; accessed 9 March 2016)
  4. d Genome-wide association model
  5. e Significance (P-value) of the most significant SNP associated with heifer conception rate