Table 1 The SPL gene family in M. truncatula
Name | Gene ID | CDS (bp) | Introns | Length (aa) | pI | Location | miR156 target |
|---|---|---|---|---|---|---|---|
MtSPL1 | Medtr1g086250 | 3012 | 9 | 1003 | 5.99 | chr1:38604282..38611936+ | NO |
MtSPL2 | Medtr3g085180 | 1305 | 3 | 434 | 8.33 | chr3:38492623..38497369+ | YES |
MtSPL3 | Medtr4g088555 | 435 | 1 | 144 | 6.97 | chr4:35174504..35179012- | YES |
MtSPL4 | Medtr2g014200 | 432 | 1 | 143 | 6.75 | chr2:3964615..3967481+ | YES |
MtSPL5A | Medtr2g078770 | 516 | 1 | 171 | 8.31 | chr2:32971840..32974296- | YES |
MtSPL5B | Medtr8g463140 | 543 | 0 | 180 | 8.95 | chr8:22196925..22198280- | YES |
MtSPL6A | Medtr5g046670 | 1503 | 4 | 500 | 7.43 | chr5:20459089..20465349- | YES |
MtSPL6B | Medtr2g461920 | 1620 | 2 | 539 | 6.78 | chr2:25606881..25611792+ | YES |
MtSPL6C | Medtr4g109770 | 1413 | 2 | 470 | 6.44 | chr4:45646472..45650584- | YES |
MtSPL7 | Medtr2g020620 | 2238 | 10 | 745 | 6.63 | chr2:6886415..6893572+ | NO |
MtSPL8 | Medtr8g005960 | 984 | 0 | 327 | 8.48 | chr8:419202..421415- | NO |
MtSPL9 | Medtr7g444860 | 945 | 0 | 314 | 8.58 | chr7:15012335..15016587- | YES |
MtSPL10A | Medtr8g080680 | 1197 | 0 | 398 | 7.55 | chr8:34725302..34727462- | YES |
MtSPL10B | Medtr8g080670 | 1239 | 0 | 412 | 7.93 | chr8:34719933..34722421- | YES |
MtSPL11 | Medtr8g080690 | 1131 | 0 | 376 | 8.65 | chr8:34729479..34731697- | YES |
MtSPL12 | Medtr7g110320 | 3006 | 0 | 1001 | 6.13 | chr7:45210190..45220920- | NO |
MtSPL13A | Medtr8g096780 | 1173 | 0 | 390 | 8.19 | chr8:40622636..40626632+ | YES |
MtSPL13B | Medtr3g099080 | 1131 | 2 | 376 | 7.04 | chr3:45410078..45413482+ | YES |
MtSPL13C | Medtr7g028740 | 1104 | 0 | 367 | 8.2 | chr7:9871981..9875095+ | YES |
MtSPL14 | Medtr1g035010 | 3012 | 8 | 1003 | 7.5 | chr1:12692334..12698670+ | NO |
MtSPL15A | Medtr7g092930 | 1014 | 0 | 337 | 8.91 | chr7:36893347..36897295- | YES |
MtSPL15B | Medtr1g053715 | 1053 | 2 | 350 | 8.86 | chr1:22678198..22682537- | YES |
MtSPL16 | Medtr2g046550 | 3078 | 9 | 1025 | 6.64 | chr2:20453789..20462574+ | NO |