The haustorial transcriptome of the cucurbit pathogen Podosphaera xanthii reveals new insights into the biotrophy and pathogenesis of powdery mildew fungi

Table 5 Principal features of PHECs obtained after structure modelling

Protein model	Score values^a		Structural analogs^b		Predicted features
Protein model	C score	TM score	PDB file	Species	Activity^c	Ligands^d
PHEC689	0.98	0.901	1QFX	Aspergillus niger	Histidine acid phosphatase	Phosphate ion
PHEC15509	−3.70	0.733	3C2H	Caenorhabditis elegans	Cell adhesion protein similar to integrin	Peptide
PHEC15584	−3.69	0.749	4QRK	Clostridium sporogenes	Cell adhesion protein	N-acetylglucosamine
PHEC15673	−0.26	0.934	2NBI	Cylindrotheca fusiformis	Cell wall protein pleuralin-1 with serine-rich region	Peptide
PHEC27213	−2	0.715	4MAH	Aspergillus oryzae	Lytic polysaccharide monooxygenase with chitin binding domain	Zinc
PHEC217529	0.87	0.856	2M2J	Salmonella typhimurium	Flavin-binding protein dodecin	Nucleic acid

^aScore values represent the reliability of each model according to I-Tasser. C-score values measure the confidence of each model and are in the range of −5 to 2, where a higher value means a model with a higher confidence. TM-score values measure the structural similarity between two protein models. TM-score is in the range of 0 to 1, being 1 a perfect match between the models
^bProtein structurally close to the PHEC model according to I-TASSER prediction. PDB = Protein Data Bank
^cPutative activity based on the results obtained from software tools I-TASSER, Phyre2, CATH/3D gene and Motif Scan
^dLigand prediction according to COACH software

ISSN: 1471-2164