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Table 1 Read statistics in small RNA libraries by genotype

From: The genome-wide impact of cadmium on microRNA and mRNA expression in contrasting Cd responsive wheat genotypes

Type

L17CK

L17Cd

H17CK

H17Cd

Raw reads

29,634,338 ± 12,235,540

23,765,742 ± 5,243,896

18,786,733 ± 2,145,550

32,365,435 ± 7,244,882

Clean reads

20,430,195 ± 8,138,193

14,922,483 ± 7,059,238

12,556,082 ± 1,740,984

19,285,729 ± 5,444,137

Unique clean reads

3,232,322 ± 981,148

2,426,636 ± 1,239,154

2,313,643 ± 314,127

2,580,979 ± 647,449

Wheat genome-matched read (redundant)

17,858,724 ± 7,263,840

12,629,611 ± 5,018,126

8,991,791 ± 1,289,534

14,299,057 ± 3,343,128

Wheat genome-matched read (unique)

2,180,300 ± 664,560

1,604,078 ± 683,985

1,313,826 ± 142,562

1,481,392 ± 264,618

Wheat genome-matched read (redundant %)

87.14 ± 1.14

86.43 ± 5.95

71.61 ± 2.78

74.81 ± 3.80

Wheat genome-matched read (unique %)

67.45 ± 0.56

67.82 ± 5.18

56.93 ± 1.82

58.12 ± 4.71

  1. In each wheat samples, data is shown as the mean of the three libraries generated ± standard deviation