Table 3 Summary of newly identified novel miRNAs in the 12 wheat sRNA libraries

L17Cd/L17CK

2B_20696^a

1.69

0.0270291

Up

CUCGCCGGUCGCGCGUCCUCC

21

2B_21940^a

2.33

0.0462198

Up

AUGACACGGGGAGGUAGC

18

2B_39534^a

6.11

0.0176417

Up

AGGCUGGAGGAACGUAGG

18

2B_40590^a

2.00

0.0383352

Up

GUGUGGAGCAAAAGGGUG

18

4B_10717^a

4.18

0.0021475

Up

CCCCGGGUGCGAGCUCCU

18

4B_12465^a

5.45

0.0221443

Up

CCUCCUGGUGAGCCUGCG

18

4B_4791^a

1.96

0.0091409

Up

UGGGGUUGUGGCAAUGGCC

19

4B_519^a

2.40

0.0050086

Up

AAUCUGGUUGUCGCCUCC

18

4B_5711^a

4.20

0.0024414

Up

GUGAAGAGACAUGGAGGU

18

4B_9306^a

1.13

0.0050015

Up

UAGAAUGGCUGGUGCUAUGGA

21

2B_19887^a

-4.18

0.0352225

Down

ACGGACCGCGCUACUACUAUAAGU

24

2B_22021^a

-1.39

0.016954

Down

AUGGAAGACGUGGUAGCC

18

2B_28100^a

-1.27

0.0412731

Down

AGGUAGAGAGGAAGGUGGG

19

2B_33543^a

-3.40

0.0480069

Down

CUCGCCGGAGGAGCGUGC

18

2B_38598^a

-2.15

0.0214449

Down

CUGCUGGUGCUGUAGCCCU

19

4B_17875

-4.36

0.0138807

Down

UUCCAAUUUACUCGUCGUGGU

21

4B_4344^a

-2.68

0.0327648

Down

GGUGUGGACCAGGUUUCC

18

4B_87^a

-4.35

0.0106819

Down

CGCGUGCAGGAUGAAGCC

18

4B_8797

-2.08

0.0458935

Down

ACUCACUCUGUAAACUAAUAUAAG

24

H17Cd/H17CK

2B_19349^a

4.00

1.83E-06

Up

AAACAGUCUGUAAAGCCCC

19

2B_20999^a

2.42

1.06E-14

Up

CUACGGGGGAAAGCAGGG

18

2B_21614^a

2.02

0.0023063

Up

UGUUGAAGUAGCUGGAAC

18

2B_21995^a

1.41

0.002425

Up

CGGAGAGGGGAGUGAAGU

18

2B_22021^a

2.93

9.43E-27

Up

AUGGAAGACGUGGUAGCC

18

2B_22879^a

3.19

0.0120242

Up

CGGCCAUCGUGAGGUUAGUGC

21

2B_25173^a

2.36

0.0000977

Up

GACUUUGAUCCAGAGAUCA

19

2B_27180^a

1.86

0.0252563

Up

GUUGGUCGGGAGUUCGAUCCU

21

2B_28100^a

1.76

4.01E-07

Up

AGGUAGAGAGGAAGGUGGG

19

2B_28714^a

1.46

0.0001773

Up

AUGAGAGGACGGACAAGG

18

2B_29589^a

1.98

0.0040311

Up

GAGUUUGGGAGUCUGUGUGU

20

2B_32148

1.66

0.0364154

Up

UCAGUGCAAUCCCUCUGGAAU

21

2B_33858^a

1.58

0.0226808

Up

CGUGCCAGCAGCCGCGGA

18

2B_37122^a

1.33

0.0002491

Up

UCUGGUGGAUGCCUUGGG

18

2B_37173^a

1.15

0.0031618

Up

AGAGGGUGGUGGAGUUUCU

19

2B_38197^a

5.03

1.57E-10

Up

UUGUUGGAUAUGUUGGUU

18

2B_40139^a

2.06

0.0018813

Up

GUGGAUGCCUUGGCGAUC

18

2B_40352^a

2.74

0.0074044

Up

CAAUGGUAGAGCAGAGGC

18

2B_42257^a

1.93

0.0031222

Up

GGCGGCGGACGGGUGAGC

18

2B_42905^a

0.91

0.0142497

Up

GAGGUGCUGCAUGGCUGG

18

2B_43522^a

1.91

0.0003365

Up

UGAGGUUUGAGAGGGGCU

18

4B_10203^a

1.29

0.0034214

Up

GAGGCGAUGAAGGACGGG

18

4B_10621^a

1.88

0.0391309

Up

GGGUGAAGCUGUGGCGCG

18

4B_10870^a

2.94

6.11E-06

Up

UGGUUCUGUAUGGAAGUG

18

4B_12067^a

1.14

0.0151284

Up

AUGAACGCUAGCGGGAGG

18

4B_12312^a

3.38

0.0022606

Up

GAGUGGUCGAGCGGGACGG

19

4B_13500^a

2.41

0.0044361

Up

GGUUCUGUAUGGAAGUGG

18

4B_13640^a

1.37

0.0041213

Up

AGGUCUGGGUUCGAGUCC

18

4B_1373^a

2.42

0.0134111

Up

GCUUGUCGCUGGUUUGAG

18

4B_15373^a

0.92

0.0420051

Up

GUGGCUCCACGUGGGCGGGC

20

4B_15496^a

1.63

0.0036066

Up

UGCGGGAUGGAGCAGUCG

18

4B_15927^a

2.37

2.51E-08

Up

AUGCUAGUCGAGCGGAUA

18

4B_16269^a

3.22

3.8E-11

Up

AGGUCGACGGUUCGAAUCC

19

4B_16562^a

1.34

0.0445484

Up

CGGAGGUCGCGGGUUCGA

18

4B_16625^a

1.94

0.0000161

Up

UCCUGGGGUUGGAGAAGG

18

4B_18394^a

1.24

0.007484

Up

GCGGCGAGAGCGGGUCGCU

19

4B_1943^a

1.85

0.0000179

Up

ACAGUGGAUGCCUUGGCA

18

4B_2104^a

1.61

0.0136994

Up

AAGCCUCUGGCGAAUGGG

18

4B_2324^a

3.28

0.0050367

Up

GAUUUAUCGGGGAAGGAU

18

4B_2847^a

3.91

0.0001901

Up

GAGGAAGGUGGAUGACGG

18

4B_4039^a

3.73

0.0200414

Up

GAACGGAAGUUGGGGGCG

18

4B_4609^a

3.46

0.0000312

Up

GAUCUUGAUGUGGUGUGCA

19

4B_4703^a

2.74

1.23E-07

Up

GUGAUUCAGCGGCGGACG

18

4B_5897^a

1.35

0.0138282

Up

AGGAGGGUGGGGAUGAGGU

19

4B_5947^a

2.75

0.0124835

Up

GAGUGGUCGAGCGGGACGG

19

4B_6530^a

2.05

3.8E-10

Up

GCUCGUGUCGUGAGCUGG

18

4B_841^a

1.64

0.0087137

Up

GAAGGUCGUGGGUUCGUG

18

4B_88^a

3.20

0.0471916

Up

AGACGUUUCCGUCGACUACGAAA

23

4B_974^a

1.79

0.0009387

Up

UAUCGUGGGUUCGAAUCC

18

2B_19630^a

-1.52

0.0134799

Down

CAGCCUGCCAACCCUGGG

18

2B_23520^a

-5.38

3.24E-07

Down

GCUUCGGCGGUAUCCUCAU

19

2B_27285^a

-1.72

0.0294342

Down

GAUGGGUCUCUGAGGGAU

18

2B_40624^a

-1.93

0.0212515

Down

UGGCGAUGAGGAACGGAA

18

2B_40888^a

-2.07

0.0151122

Down

GGCGGAGGCUGCGGGUUU

18

4B_11590^a

-2.33

0.0093351

Down

GAGGGGUGUUGAUUUUCCGG

20

4B_7298^a

-1.77

0.0132316

Down

GAGGGGUGUUGAUUUUCCGG

20

4B_7309^a

-2.87

0.0008129

Down

GAACGGAAGUUGGGGGCG

18