Table 4 Identified putative wheat HMA genes
HMAs | Subfamily gene name | Ensemble Wheat Gene ID | Chromosome location | Length (bp) | Exons | Introns | Amino acid length (aa) | PI | MW (kDA) | EST count |
|---|---|---|---|---|---|---|---|---|---|---|
TaHMA1;1 | TaHMA1 | Trae_5AL_C89EEBE50 | TGACv1_scaffold_375043_5AL:69226–81,875 | 12,650 | 16 | 15 | 790 | 6.31 | 84.44 | 2 |
TaHMA1;2 | Trae_5BL_F83C809F0 | TGACv1_scaffold_405147_5BL:88295–97,375 | 9081 | 13 | 12 | 480 | 8.21 | 51.96 | 2 | |
TaHMA1;3 | nd | TGACv1_scaffold_556453_7AL:106656–112,341 | 5686 | 8 | 7 | 419 | 6.56 | 44.07 | 20 | |
TaHMA1;4 | Trae_7BL_041308E74 | TGACv1_scaffold_578186_7BL:25106–34,662 | 9557 | 14 | 13 | 832 | 6.90 | 88.37 | 61 | |
TaHMA1;5 | Trae_7DL_FBCC75BBC | TGACv1_scaffold_603768_7DL:23146–31,623 | 8478 | 12 | 11 | 748 | 6.98 | 78.96 | 39 | |
TaHMA2;1 | TaHMA2 | Trae_7DL_A5269C73F | TGACv1_scaffold_602651_7DL:105511–113,285 | 7742 | 10 | 9 | 1003 | 6.53 | 108.33 | 34 |
TaHMA2;2 | Trae_7AL_8304348B7 | TGACv1_scaffold_556712_7AL:90458–108,176 | 17,719 | 9 | 8 | 985 | 6.29 | 106.46 | 21 | |
TaHMA2;3 | Trae_7BL_A4BE6BD10 | TGACv1_scaffold_579416_7BL:14127–24,069 | 9282 | 10 | 9 | 1023 | 6.51 | 110.32 | 37 | |
TaHMA2;4 | Trae_7BL_0CF58CF4E | TGACv1_scaffold_577252_7BL:118443–123,897 | 5455 | 9 | 8 | 766 | 7.83 | 81.09 | 3 | |
TaHMA2;5 | Trae_7AL_6AE850114 | TGACv1_scaffold_557470_7AL:61198–66,965 | 5768 | 10 | 9 | 939 | 7.11 | 99.55 | 6 | |
TaHMA2;6 | Trae_7DL_EED4BED66 | TGACv1_scaffold_603863_7DL:43200–49,689 | 5572 | 8 | 7 | 800 | 6.44 | 84.37 | 6 | |
TaHMA3;1 | TaHMA3 | Trae_5BL_D6C3DC326 | TGACv1_scaffold_404346_5BL:222670–226,813 | 4108 | 6 | 5 | 829 | 6.05 | 86.82 | 3 |
TaHMA3;2 | nd | TGACv1_scaffold_375473_5AL:29654–33,170 | 3517 | 6 | 5 | 816 | 6.29 | 85.66 | 2 | |
TaHMA3;3 | nd | TGACv1_scaffold_435190_5DL:5098–8725 | 3628 | 6 | 5 | 853 | 6.12 | 89.09 | 3 | |
TaHMA4;1 | TaHMA4 | Trae_6DS_26C5A0A44 | TGACv1_scaffold_543118_6DS:56997–63,045 | 6049 | 10 | 9 | 687 | 6.01 | 73.46 | 30 |
TaHMA4;2 | Trae_6BS_A8B960E60 | TGACv1_scaffold_515718_6BS:7391–13,506 | 6116 | 9 | 8 | 980 | 5.44 | 105.63 | 29 | |
TaHMA4;3 | Trae_6AS_6F306F27E | TGACv1_scaffold_485988_6AS:25642–29,385 | 3744 | 7 | 6 | 687 | 6.01 | 73.47 | 25 | |
TaHMA5;1 | TaHMA5 | Trae_2DL_51FF05F66 | TGACv1_scaffold_157956_2DL:22600–32,475 | 9876 | 6 | 5 | 1000 | 5.65 | 108.18 | 9 |
TaHMA5;2 | Trae_2AL_D0EABF355 | TGACv1_scaffold_099043_2AL:1541–7440 | 5900 | 6 | 5 | 1011 | 5.66 | 109.11 | 9 | |
TaHMA5;3 | Trae_2BL_19B3E60AA | TGACv1_scaffold_130949_2BL:4724–10,512 | 5789 | 6 | 5 | 994 | 5.88 | 107.49 | 9 | |
TaHMA6;1 | TaHMA6 | Trae_6BS_9A12C2A1D | TGACv1_scaffold_513141_6BS:286354–292,595 | 6242 | 9 | 8 | 974 | 5.73 | 104.50 | 50 |
TaHMA6;2 | Trae_6DS_9FA053DF8 | TGACv1_scaffold_542481_6DS:33526–39,252 | 5727 | 9 | 8 | 1042 | 5.53 | 111.76 | 50 | |
TaHMA6;3 | Trae_6AS_9321C1C5B | TGACv1_scaffold_486033_6AS:36396–41,875 | 5480 | 9 | 8 | 997 | 5.23 | 106.85 | 53 | |
TaHMA7;1 | TaHMA7 | Trae_7AS_766146E70 | TGACv1_scaffold_569059_7AS:131450–140,663 | 9214 | 17 | 16 | 947 | 7.26 | 99.55 | 22 |
TaHMA7;2 | Trae_7BS_8EC4B41E4 | TGACv1_scaffold_592600_7BS:48974–58,635 | 9662 | 17 | 16 | 952 | 7.23 | 100.02 | 26 | |
TaHMA7;3 | Trae_7DS_04F16455B | TGACv1_scaffold_622783_7DS:19856–29,376 | 9521 | 17 | 16 | 952 | 6.98 | 99.94 | 26 | |
TaHMA8;1 | TaHMA8 | Trae_4BL_89775421A | TGACv1_scaffold_640736_U:185896–195,006 | 9111 | 17 | 16 | 903 | 6.07 | 94.48 | 37 |
TaHMA8;2 | Trae_4AS_622EEFE10 | TGACv1_scaffold_306691_4AS:30689–37,419 | 6731 | 17 | 16 | 900 | 5.85 | 94.16 | 37 | |
TaHMA8;3 | Trae_4DL_385639507 | TGACv1_scaffold_344605_4DL:1306–16,767 | 15,462 | 20 | 19 | 1702 | 6.93 | 185.21 | 30 | |
TaHMA9;1 | TaHMA9 | Trae_7AL_7A2639A1B | TGACv1_scaffold_558946_7AL:1236–7780 | 6545 | 9 | 8 | 1001 | 5.29 | 106.89 | 17 |
TaHMA9;2 | Trae_7DL_DF97DD324 | TGACv1_scaffold_604439_7DL:28926–35,180 | 6255 | 9 | 8 | 1001 | 5.40 | 106.78 | 18 | |
TaHMA9;3 | Trae_7BL_EFF0E2E31 | TGACv1_scaffold_579154_7BL:35573–41,675 | 6103 | 9 | 8 | 1001 | 5.28 | 106.77 | 16 |