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Table 1 Number of lincRNAs differentially expressed upon different treatments. The experimental conditions compared are indicated in the first column (Treatment) where “ctrl” refers to untreated control. The numbers in brackets indicate the number of lincRNAs present in TAIR10 dataset. The number of lincRNAs up- and down-regulated that are predicted as trans-NATs are reported in the columns trans-NATs UP and trans-NATs DOWN
| Treatment | lincRNAs UP (TAIR10) | trans-NATs UP | lincRNAs DOWN (TAIR10) | trans-NATs DOWN |
|---|---|---|---|---|
| Low Pi vs High Pi | 58 (11) | 10 | 88 (10) | 11 |
| Root IAA vs Root ctrl | 4 (1) | 0 | 27 (1) | 3 |
| Root ABA vs Root ctrl | 55 (8) | 7 | 73 (8) | 12 |
| Root MeJA vs Root ctrl | 4 (1) | 0 | 32 (5) | 4 |
| Root ACC vs Root ctrl | 0 (0) | 0 | 3 (1) | 0 |
| Shoot IAA vs Shoot ctrl | 0 (0) | 0 | 1 (0) | 1 |
| Shoot ABA vs Shoot ctrl | 39 (4) | 2 | 39 (11) | 3 |
| Shoot MeJA vs Shoot ctrl | 7 (0) | 0 | 4 (3) | 0 |
| Shoot ACC vs Shoot ctrl | 0 (0) | 0 | 0 (0) | 0 |
| Root ctrl vs Shoot ctrl | 129 (15) | 21 | 233 (31) | 34 |
| Total number of unique genes | 192 (32) | 31 | 359 (42) | 57 |
