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Table 1 Number of lincRNAs differentially expressed upon different treatments. The experimental conditions compared are indicated in the first column (Treatment) where “ctrl” refers to untreated control. The numbers in brackets indicate the number of lincRNAs present in TAIR10 dataset. The number of lincRNAs up- and down-regulated that are predicted as trans-NATs are reported in the columns trans-NATs UP and trans-NATs DOWN

From: Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions

Treatment lincRNAs UP (TAIR10) trans-NATs UP lincRNAs DOWN (TAIR10) trans-NATs DOWN
Low Pi vs High Pi 58 (11) 10 88 (10) 11
Root IAA vs Root ctrl 4 (1) 0 27 (1) 3
Root ABA vs Root ctrl 55 (8) 7 73 (8) 12
Root MeJA vs Root ctrl 4 (1) 0 32 (5) 4
Root ACC vs Root ctrl 0 (0) 0 3 (1) 0
Shoot IAA vs Shoot ctrl 0 (0) 0 1 (0) 1
Shoot ABA vs Shoot ctrl 39 (4) 2 39 (11) 3
Shoot MeJA vs Shoot ctrl 7 (0) 0 4 (3) 0
Shoot ACC vs Shoot ctrl 0 (0) 0 0 (0) 0
Root ctrl vs Shoot ctrl 129 (15) 21 233 (31) 34
Total number of unique genes 192 (32) 31 359 (42) 57
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BMC Genomics

ISSN: 1471-2164

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