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Table 1 Mapping results of RNA-Seq data from different virulence Foc strains in vitro and in planta samples

From: Transcriptome analysis of virulence-differentiated Fusarium oxysporum f. sp. cucumerinum isolates during cucumber colonisation reveals pathogenicity profiles

Samplea Clean Data Size (bp) Clean Reads Number Total fungal Mapped Reads (%) Unique fungal Match (%) Multi-position fungal Match (%)
InVir 0 h-1 6147207600 40981384 87.1 56.31 30.78
InVir 0 h-2 6180869700 41205798 86.25 57.98 28.27
I_0h-3 6169962900 41133086 86.7 58.01 28.69
InVir 24 h-1 10209826200 68065508 4.5 3.3 1.19
InVir 24 h-2 15215636700 101437578 2.28 1.67 0.6
InVir 24 h-3 10211927100 68079514 5.92 4.34 1.59
InVir 120 h-1 10324005300 68826702 31.46 20.8 10.66
InVir 120 h-2 10278412200 68522748 32.45 22.42 10.02
InVir 120 h-3 10328451900 68856346 14.64 10.16 4.49
WT 0 h-1 6060463800 40403092 82.7 55.36 27.34
WT 0 h-2 6062771100 40418474 82.27 53.8 28.47
WT 0 h-3 6104587500 40697250 86.83 57.85 28.99
WT 24 h-1 27172202700 181148018 1.12 0.87 0.25
WT 24 h-2 16219629900 108130866 2.62 1.94 0.68
WT 24 h-3 19779039300 131860262 1.72 1.29 0.43
WT 120 h-1 17173338600 114488924 2.09 1.5 0.6
WT 120 h-2 10163430300 67756202 5.71 3.95 1.76
WT 120 h-3 15385975500 102573170 2.39 1.69 0.71
  1. aletters ‘WT’ and ‘InVir’ represent the wild strain foc-3b (lower virulence) and induced virulence variation Ra-4 (high virulence), respectively. The number after the letters represent the sampling times