Table 4 Target prediction for responsive miRNA in P. minor against F. oxysporum
From: Regulation of terpenoid biosynthesis by miRNA in Persicaria minor induced by Fusarium oxysporum
miRNA | Score | ID target | Target annotation |
|---|---|---|---|
pmi-miR156b/c | 1.0 | comp48942_c0_seq1 | SPL13 |
3.0 | comp66611_c0_seq1 | Ferric reduction oxidase | |
3.5 | comp40605_c1_seq1 | F-box kelch repeat | |
pmi-miR156d | 3.5 | comp52863_c0_seq1 | F-box protein SKIP27 |
3.5 | comp64448_c1_seq76 | Nuclear transcription factor Y subunit A | |
pmi-miR156j | 2.0 | comp51572_c1_seq2 | SPL4 |
2.0 | comp54862_c0_seq3 | Malate dehydrogenase | |
2.5 | comp40605_c1_seq1 | F-box kelch repeat | |
pmi-miR156n/o | 1.5 | comp52471_c0_seq1 | SPL16 |
3.0 | comp63113_c0_seq2 | bHLH55 | |
4.0 | comp52567_c0_seq3 | Probable signal peptidase complex subunit 1 | |
pmi-miR157d | 3.8 | comp65851_c2_seq1 | Cytochrome P450 81F1 |
4.0 | comp62138_c0_seq4 | Probable carboxylesterase18 | |
pmi-miR159 | 1.0 | comp57600_c3_seq1 | Transcription factor GAMYB |
2.0 | comp67380_c0_seq2 | Putative disease resistance protein RGA3 | |
pmi-miR159a | 2.5 | comp58874_c0_seq4 | WUSHEL |
2.5 | comp65589_c1_seq2 | Uncharacteized protein At2g41620 | |
pmi-miR159b | 1.5 | comp57600_c3_seq1 | Transcription factor GAMYB |
3.8 | comp59983_c0_seq2 | Mitogen-activated protein kinase kinase kinase1 | |
4.0 | comp61116_c0_seq1 | Transcription factor bHLH140 | |
pmi-miR160a | 2.5 | comp65542_c1_seq1 | Probable galacturonosyltransferase-like 5 |
3.5 | comp63097_c0_seq14 | Auxin-responsive protein IAA9 | |
pmi-miR162 | 4.0 | comp61878_c1_seq1 | ABC transporter C family member3 |
pmi-miR164b/c | 3.0 | comp58722_c2_seq1 | Putative disease resistance protein RGA4 |
3.2 | comp64889_c2_seq23 | E3 ubiquitin-protein ligase RNF8-A | |
pmi-miR165b | 3.5 | comp12615_c0_seq1 | Putative F-box protein At3g10240 |
3.8 | comp31134_c0_seq2 | F-box protein At3g44326 | |
3.8 | comp62577_c0_seq2 | Probable galacturonosyltransferase12 | |
pmi-miR166a | 1.5 | comp62172_c1_seq10 | Homeobox-leucine zipper protein HOX32 |
3.5 | comp67610_c2_seq1 | Probable WRKY transcription factor19 | |
pmi-miR166b | 4.0 | comp66580_c3_seq9 | Serine/threonine-protein kinase TIO |
pmi-miR166d | 2.8 | comp62172_c1_seq1 | Homeobox-leucine zipper protein HOX32 |
4.0 | comp23266_c0_seq1 | Probable disease resistance protein At5g63020 | |
pmi-miR166i | 2.0 | comp67539_c0_seq10 | Probable LRR receptor-like protein kinase At1g51890 |
2.5 | comp58141_c0_seq2 | NADH dehydrogenase (ubiquinone) complexI | |
3.5 | comp67658_c0_seq4 | Programmed cell death protein4 | |
pmi-miR166j | 1.8 | comp62172_c1_seq12 | Homeobox-leucine zipper protein ATHB-8 |
4.0 | comp60418_c0_seq2 | Protein caperon dnaJ15 | |
pmi-miR167 | 2.5 | comp65895_c0_seq14 | Probable glycosyltransferase At5g03795 |
3.5 | comp63430_c0_seq5 | Tubulin α-5 chain | |
pmi-miR167a | 2.0 | comp67548_c0_seq10 | 26S protease regulatory subunit 6B homolog |
4.0 | comp22416_c0_seq1 | Putative ribonuclease H Protein At1g65750 | |
pmi-miR167d | 4.0 | comp58506_c2_seq5 | Pre-mRNA-splicing factor SF2 |
4.0 | comp67417_c0_seq18 | Binding protein DNA BIN4 | |
pmi-miR167h/i/j | 2.5 | comp65003_c0_seq2 | AR6 HPI |
3.2 | comp52198_c0_seq1 | E3 ubiquitin protein ligase DRIP1 | |
3.8 | comp60694_c0_seq1 | Probable mediator of RNA polymerase II transcription subunit 26b | |
pmi-miR168 | 3.5 | comp2671_c0_seq1 | Uncharacterized mitochondrial protein AtMg00820 |
3.5 | comp65213_c0_seq4 | Putative F-box protein At3g47150 | |
pmi-miR168a | 3.5 | comp67057_c0_seq6 | Guard cell S-type anion channel SLAC1 |
pmi-miR168b | 3.8 | comp33471_c0_seq1 | U-box domain-containing protein 36 |
pmi-miR169f | 3.0 | comp65145_c0_seq1 | Serine/threonine-protein kinase ppk 15 |
3.2 | comp60891_c3_seq1 | Nuclear transcription factor Y subunit A | |
pmi-miR171b | 1.5 | comp59653_c0_seq3 | SCL6 |
2.5 | comp68032_c2_seq2 | Putative disease resistance protein RGA4 | |
pmi-miR171d/e | 1.8 | comp59653_c0_seq3 | SCL6 |
2.2 | comp48883_c1_seq1 | Uncharacterized mitochondrial protein AtMg01060 | |
3.8 | comp58120_c1_seq1 | Transmembrane protein 214-A | |
pmi-miR171f | 2.0 | comp59653_c0_seq3 | SCL6 |
2.5 | comp68032_c2_seq3 | Putative disease resistance protein RGA4 | |
pmi-miR172a | 1.5 | comp52285_c0_seq1 | AP2 |
pmi-miR172i | 3.5 | comp57377_c0_seq5 | Transcription factor NAC29 |
3.8 | comp63311_c0_seq3 | Transcription factor CAULIFLOWER | |
4.0 | comp33332_c0_seq1 | E3 ubiquitin-protein ligase makorin | |
pmi-miR2111 | 3.0 | comp29780_c0_seq1 | Probable WRKY transcription factor 7 |
3.5 | comp41575_c0_seq2 | Putative ribonuclease H protein At1g65750 | |
pmi-miR2111a/b/c | 2.5 | comp41652_c0_seq2 | Transcription factor WRKY55 |
3.2 | comp59219_c1_seq1 | Actin-related protein 6 | |
3.5 | comp63701_c0_seq2 | Transcription factor bHLH51 | |
pmi-miR319 | 3.8 | comp61400_c1_seq1 | Probable sulfate transporter 3.5 |
pmi-miR319h | 4.0 | comp41320_c0_seq1 | Small heat shock protein |
pmi-miR390 | 3.8 | comp68004_c1_seq12 | Putative disease resistance protein RGA4 |
3.8 | comp68227_c1_seq27 | AGO5 | |
pmi-miR393c | 3.2 | comp60765_c4_seq1 | Proteasome subunit α type-1-A |
3.8 | comp64012_c0_seq1 | Pectinesterase31 | |
pmi-miR396 | 2.5 | comp12732_c0_seq1 | Putative ribonuclease H protein At1g65750 |
pmi-miR396a | 2.5 | comp60490_c0_seq1 | Peroxidase57 |
4.0 | comp47449_c0_seq1 | Probable DXS | |
pmi-miR396c | 2.5 | comp47994_c0_seq1 | Hypersensitive-induced response protein 1 |
pmi-miR396e | 3.2 | comp58032_c1_seq1 | Cytochrome b |
3.5 | comp60164_c0_seq2 | Putative F-box protein At3g23950 | |
pmi-miR397a | 0.8 | comp67947_c0_seq1 | Laccase-4 |
pmi-miR397b | 1.5 | comp67947_c0_seq1 | Laccase-4 |
pmi-miR398 | 3.5 | comp65120_c0_seq4 | L-ascorbate oxidase |
pmi-miR398b | 3.8 | comp63418_c1_seq1 | Homeobox-leucine zipper protein ANTHOCYANINLESS2 |
4.0 | comp34288_c0_seq1 | Cellulose synthase-like protein D3 | |
pmi-miR398f/g | 4.0 | comp67631_c2_seq15 | DXR |
pmi-miR408 | 1.5 | comp50583_c0_seq1 | Basic blue protein |
pmi-miR530 | 4.0 | comp31767_c1_seq1 | MVD |
4.0 | comp56913_c1_seq1 | Probable sulphate transporter | |
pmi-miR530b | 3.0 | comp66662_c8_seq34 | 50S ribosomal protein L2 |
pmi-miR535 | 2.5 | comp53737_c0_seq1 | Ferredoxin-thioredoxin reduktase catalytic chain |
pmi-miR535a | 3.2 | comp51270_c0_seq1 | Transcription factor TCP8 |
3.5 | comp55340_c0_seq1 | Probable cellulose synthase A catalytic subunit 5 | |
pmi-miR858 | 3.8 | comp47431_c1_seq1 | E3 ubiquitin-protein ligase ATL31 |
4.0 | comp55416_c0_seq1 | Callos synthase 10 | |
pmi-miR894 | 2.0 | comp66746_c0_seq1 | U-box domain-containing protein 13 |
2.5 | comp67024_c1_seq10 | Heat shock 70 kDa protein 16 | |
4.0 | comp18439_c0_seq1 | Polygalacturonase At1g48100 | |
pmi-miR4995 | 3.0 | comp60227_c1_seq1 | Probable WRKY transcription factor 39 |
pmi-miR5077 | 3.2 | comp30119_c0_seq1 | Ethylene-responsive transcription factor ER0 HPI25 |
3.5 | comp63610_c1_seq2 | Cellulose synthase A catalytic subunit 7 | |
pmi-miR5368 | 3.8 | comp12493_c0_seq1 | Sucrose synthase 5 |
pmi-miR6173 | 3.0 | comp46206_c0_seq1 | Sesquiterpene synthase |
4.0 | comp62238_c1_seq1 | Farnesyl diphosphate synthase 1 | |
pmi-miR6300 | 3.2 | comp55945_c0_seq1 | HMGR |
3.5 | comp59913_c0_seq1 | Proteasome subunit beta type-2-A | |
pmi-miR6478 | 3.8 | comp62172_c1_seq14 | Homeobox-leucine zipper protein HOX33 |
pmi-nov_12 | 2.5 | comp58932_c3_seq6 | Alcohol dehydrogenase |
pmi-nov_13 | 2.5 | comp65932_c1_seq10 | Mitogen-activated protein kinase 16 |
3.8 | comp56286_c0_seq1 | Mevalonate kinase |