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Table 9 Performance comparision on Mouse BioGRID datasets

From: A seed-extended algorithm for detecting protein complexes based on density and modularity with topological structure and GO annotations

Data set

Algorithm

Number

F-measure

Jaccard

   

Precision

Recall

F-measure

JaccardI

JaccardS

Jaccard

BioGRID

MCODE

45

0.2222 2nd

0.0585

0.0926

0.1222

0.0605

0.0809

 

MCL

425

0.0635

0.109

0.0803

0.0562

0.1385

0.08

 

CFinder

4420 1 st

0.1115

0.4441 1 st

0.1783

0.1566 3rd

0.2874 1 st

0.2027 2nd

 

DPClus

669

0.1166

0.3085

0.1692

0.1389

0.2017

0.1645

 

IPCA

1888 3rd

0.1372

0.3936 3rd

0.2035

0.1526

0.2323 3rd

0.1842

 

CMC

737

0.1506

0.391

0.2175 3rd

0.1703 2nd

0.225

0.1939 3rd

 

COACH

611

0.2029 3rd

0.3404

0.2543 2nd

0.14

0.2154

0.1697

 

HC-PIN

88

0.0682

0.0186

0.0292

0.0276

0.0244

0.0259

 

SPICi

288

0.1146

0.1383

0.1253

0.1363

0.1482

0.142

 

ClusterONE

327

0.1529

0.1888

0.169

0.1376

0.1349

0.1362

 

WPNCA

828

0.1618

0.2553

0.1981

0.0882

0.1831

0.119

 

CALM

3596 2nd

0.035

0.2899

0.0625

0.0511

0.2135

0.0825

 

ClusterEPs

N/A

N/A

N/A

N/A

N/A

N/A

N/A

 

SE-DMTG

942

0.311 1 st

0.4309 2nd

0.3613 1 st

0.2133 1 st

0.257 2nd

0.2331 1 st

  1. CORUM Mouse complexes is used as standard complexes.
  2. NOTE: The highest value in each row is shown in bold