Table 2 Differentially expressed genes (DEGs) between wild type N. benthamiana and the ΔXT/FT transgenic line based on a comparison of leaf mRNA-seq data and confirmation by quantitative PCR
From: Genome and transcriptome characterization of the glycoengineered Nicotiana benthamiana line ΔXT/FT
Gene ID | Function | E-Value | Identity | TPM ΔXT/FT | TPM WT |
|---|---|---|---|---|---|
Downregulated genes | |||||
g10744 | uncharacterized oxidoreductase At4g09670-like | 0 | 96% | 1.9 ± 0.6 | 18.5 ± 2.4 |
g25290 | alpha-soluble nsf attachment | 0 | 100% | 4.3 ± 0.4 | 34.0 ± 1.1 |
g29021 | PREDICTED: LOW QUALITY PROTEIN: primary amine oxidase-like | 0 | 92% | 0.1 ± 0.0 | 20.4 ± 1.3 |
Upregulated genes | |||||
g76921 | transcription initiation factor TFIID subunit 12-like isoform X1 | 0 | 85% | 41.4 ± 2.8 | 5.1 ± 0.0 |