Table 3 Significantly enriched pathways involving DEGs during stem bending
| Â | Pathway | Pathway ID | Number of all genes with pathway annotation (10,911) | Number of DEGs with pathway annotation (4,653) | Corrected P-Value |
|---|---|---|---|---|---|
stage 2 vs stage 0 | Phenylpropanoid biosynthesis | ko00940 | 146 (1.3%) | 70 (1.5%) | 0.00E+ 00 |
Phenylalanine metabolism | ko00360 | 109 (1.0%) | 47 (1.0%) | 5.81E-10 | |
Starch and sucrose metabolism | ko00500 | 238 (2.2%) | 76 (1.6%) | 9.83E-09 | |
Plant hormone signal transduction | ko04075 | 316 (2.9%) | 93 (2.0%) | 9.83E-09 | |
Amino sugar and nucleotide sugar metabolism | ko00520 | 157 (1.4%) | 53 (1.1%) | 4.97E-07 | |
Stilbenoid, diarylheptanoid and gingerol biosynthesis | ko00945 | 24 (0.2%) | 15 (0.3%) | 8.22E-06 | |
Flavonoid biosynthesis | ko00941 | 34 (0.3%) | 18 (0.4%) | 1.46E-05 | |
Pentose and glucuronate interconversions | ko00040 | 99 (0.9%) | 34 (0.7%) | 7.52E-05 | |
Cyanoamino acid metabolism | ko00460 | 54 (0.5%) | 22 (0.5%) | 1.68E-04 | |
Gap junction | ko04540 | 52 (0.5%) | 21 (0.5%) | 2.74E-04 | |
stage 4 vs stage 0 | Plant hormone signal transduction | ko04075 | 316 (2.9%) | 120 (2.6%) | 0.00E+ 00 |
Phenylpropanoid biosynthesis | ko00940 | 146 (1.3%) | 78 (1.7%) | 0.00E+ 00 | |
Phenylalanine metabolism | ko00360 | 109 (1.0%) | 56 (1.2%) | 4.68E-13 | |
Starch and sucrose metabolism | ko00500 | 238 (2.2%) | 87 (1.9%) | 1.03E-09 | |
Amino sugar and nucleotide sugar metabolism | ko00520 | 157 (1.4%) | 56 (1.2%) | 8.01E-06 | |
Stilbenoid, diarylheptanoid and gingerol biosynthesis | ko00945 | 24 (0.2%) | 16 (0.3%) | 1.01E-05 | |
Cysteine and methionine metabolism | ko00270 | 125 (1.1%) | 46 (1.0%) | 2.46E-05 | |
Flavonoid biosynthesis | ko00941 | 34 (0.3%) | 19 (0.4%) | 3.22E-05 | |
Gap junction | ko04540 | 52 (0.5%) | 24 (0.5%) | 1.08E-04 | |
Cyanoamino acid metabolism | ko00460 | 54 (0.5%) | 24 (0.5%) | 2.24E-04 | |
stage 4 vs stage 2 | Biosynthesis of unsaturated fatty acids | ko01040 | 65 (0.6%) | 14 (0.3%) | 1.23E-11 |
Phenylpropanoid biosynthesis | ko00940 | 146 (1.3%) | 13 (0.3%) | 3.90E-06 | |
Phenylalanine metabolism | ko00360 | 109 (1.0%) | 10 (0.2%) | 6.47E-05 | |
Monoterpenoid biosynthesis | ko00902 | 10 (0.1%) | 3 (0.1%) | 4.78E-03 | |
Nitrogen metabolism | ko00910 | 68 (0.6%) | 6 (0.1%) | 4.78E-03 | |
Metabolism of xenobiotics by cytochrome P450 | ko00980 | 53 (0.5%) | 5 (0.1%) | 9.74E-03 | |
Plant hormone signal transduction | ko04075 | 316 (2.9%) | 12 (0.3%) | 1.40E-02 | |
Starch and sucrose metabolism | ko00500 | 238 (2.2%) | 10 (0.2%) | 1.52E-02 | |
Drug metabolism - cytochrome P450 | ko00982 | 46 (0.4%) | 4 (0.1%) | 2.92E-02 | |
Ubiquinone and other terpenoid-quinone biosynthesis | ko00130 | 48 (0.4%) | 4 (0.1%) | 3.13E-02 |