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Table 3 Significantly enriched pathways involving DEGs during stem bending

From: Transcriptome profiling of Gerbera hybrida reveals that stem bending is caused by water stress and regulation of abscisic acid

  Pathway Pathway ID Number of all genes with pathway annotation (10,911) Number of DEGs with pathway annotation (4,653) Corrected P-Value
stage 2 vs stage 0 Phenylpropanoid biosynthesis ko00940 146 (1.3%) 70 (1.5%) 0.00E+ 00
Phenylalanine metabolism ko00360 109 (1.0%) 47 (1.0%) 5.81E-10
Starch and sucrose metabolism ko00500 238 (2.2%) 76 (1.6%) 9.83E-09
Plant hormone signal transduction ko04075 316 (2.9%) 93 (2.0%) 9.83E-09
Amino sugar and nucleotide sugar metabolism ko00520 157 (1.4%) 53 (1.1%) 4.97E-07
Stilbenoid, diarylheptanoid and gingerol biosynthesis ko00945 24 (0.2%) 15 (0.3%) 8.22E-06
Flavonoid biosynthesis ko00941 34 (0.3%) 18 (0.4%) 1.46E-05
Pentose and glucuronate interconversions ko00040 99 (0.9%) 34 (0.7%) 7.52E-05
Cyanoamino acid metabolism ko00460 54 (0.5%) 22 (0.5%) 1.68E-04
Gap junction ko04540 52 (0.5%) 21 (0.5%) 2.74E-04
stage 4 vs stage 0 Plant hormone signal transduction ko04075 316 (2.9%) 120 (2.6%) 0.00E+ 00
Phenylpropanoid biosynthesis ko00940 146 (1.3%) 78 (1.7%) 0.00E+ 00
Phenylalanine metabolism ko00360 109 (1.0%) 56 (1.2%) 4.68E-13
Starch and sucrose metabolism ko00500 238 (2.2%) 87 (1.9%) 1.03E-09
Amino sugar and nucleotide sugar metabolism ko00520 157 (1.4%) 56 (1.2%) 8.01E-06
Stilbenoid, diarylheptanoid and gingerol biosynthesis ko00945 24 (0.2%) 16 (0.3%) 1.01E-05
Cysteine and methionine metabolism ko00270 125 (1.1%) 46 (1.0%) 2.46E-05
Flavonoid biosynthesis ko00941 34 (0.3%) 19 (0.4%) 3.22E-05
Gap junction ko04540 52 (0.5%) 24 (0.5%) 1.08E-04
Cyanoamino acid metabolism ko00460 54 (0.5%) 24 (0.5%) 2.24E-04
stage 4 vs stage 2 Biosynthesis of unsaturated fatty acids ko01040 65 (0.6%) 14 (0.3%) 1.23E-11
Phenylpropanoid biosynthesis ko00940 146 (1.3%) 13 (0.3%) 3.90E-06
Phenylalanine metabolism ko00360 109 (1.0%) 10 (0.2%) 6.47E-05
Monoterpenoid biosynthesis ko00902 10 (0.1%) 3 (0.1%) 4.78E-03
Nitrogen metabolism ko00910 68 (0.6%) 6 (0.1%) 4.78E-03
Metabolism of xenobiotics by cytochrome P450 ko00980 53 (0.5%) 5 (0.1%) 9.74E-03
Plant hormone signal transduction ko04075 316 (2.9%) 12 (0.3%) 1.40E-02
Starch and sucrose metabolism ko00500 238 (2.2%) 10 (0.2%) 1.52E-02
Drug metabolism - cytochrome P450 ko00982 46 (0.4%) 4 (0.1%) 2.92E-02
Ubiquinone and other terpenoid-quinone biosynthesis ko00130 48 (0.4%) 4 (0.1%) 3.13E-02