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Table 5 DEGs related to osmotic and oxidative stresses and proline biosynthetic pathway during stem bending
| Gene ID | Putative function | Stage 2 vs Stage 0 | Stage 4 vs Stage 0 | ||
|---|---|---|---|---|---|
| FDR | log2FC | FDR | log2FC | ||
| Osmotic stress related genes | |||||
| comp170518_c0 | Homeobox-leucine zipper protein ATHB 12-like | 1.63E-09 | 7.49 | ||
| comp88289_c0 | Mitochondrial phosphate transporter 3;1 | 5.60E-03 | 2.73 | 6.78E-06 | 2.61 |
| comp116208_c0 | Serine/threonine-protein kinase SAPK 3 | 8.60E-05 | 3.01 | ||
| comp46146_c0 | DEAD-box ATP-dependent RNA helicase 53 | 4.94E-02 | 1.34 | ||
| comp73954_c0 | SGF29 tudor-like domain | 4.51E-03 | 1.28 | 3.42E-02 | 0.87 |
| comp56410_c0 | Mitochondrial HSO70 isoform | 3.56E-15 | 1.23 | 1.10E-38 | 1.16 |
| comp87549_c0 | Lipocalin / cytosolic fatty-acid binding protein | 3.74E-16 | 1.23 | 1.38E-86 | 1.23 |
| comp84431_c0 | Mitochondrial HSO70 isoform | 8.44E-07 | 1.12 | 5.20E-24 | 1.22 |
| comp97921_c0 | 3-ketoacyl-CoA synthase 11 | 4.31E-05 | 1.10 | 1.71E-07 | 0.91 |
| comp35369_c0 | Calcineurin B-like protein | 1.20E-02 | 1.10 | 3.49E-05 | 1.26 |
| comp87642_c0 | Aldehyde dehydrogenase family 7 member B4-like | 1.64E-16 | 1.09 | 3.25E-62 | 1.13 |
| comp88862_c0 | Pyridoxal biosynthesis protein PDX1 | 7.77E-15 | 1.07 | 3.62E-19 | 0.67 |
| comp88516_c0 | Mitochondrial arginine transporter BAC2-like | 1.37E-06 | 0.82 | 1.49E-30 | 1.08 |
| comp74835_c0 | Pyrophosphate-energized inorganic pyrophosphatase | 3.41E-02 | 1.37 | ||
| comp90616_c0 | ADIPOR-like receptor CG5315-like | 2.20E-03 | 0.72 | 2.84E-32 | 1.20 |
| comp75402_c0 | Fructose-bisphosphate aldolase | 2.29E-65 | 1.42 | ||
| comp72709_c0 | Fructose-bisphosphate aldolase cytoplasmic isozyme | 1.78E-06 | 1.35 | ||
| Oxidative stress related genes | |||||
| comp74749_c0 | Vacuolar iron transporter homolog | 1.81E-24 | 5.15 | 2.50E-51 | 5.29 |
| comp54647_c0 | Peroxidase | 5.61E-83 | 3.62 | 9.01E-137 | 3.27 |
| comp88411_c0 | Cationic peroxidase | 4.25E-48 | 3.26 | 4.26E-73 | 2.80 |
| comp44427_c0 | MATE efflux family protein FRD3-like | 9.69E-58 | 2.97 | 1.61E-80 | 2.60 |
| comp89738_c0 | Heat shock factor protein HSF30 | 3.42E-19 | 2.90 | 1.96E-04 | 1.18 |
| comp92757_c0 | ATP-dependent Clp protease ATP-binding subunit ClpB homolog 1 | 1.04E-43 | 2.55 | 2.80E-174 | 2.41 |
| comp111750_c0 | Peroxidase 17-like | 1.30E-15 | 2.48 | 1.22E-48 | 3.17 |
| comp91849_c0 | Peroxidase 55 | 2.99E-47 | 2.21 | 9.94E-182 | 2.62 |
| comp78537_c0 | Calcium-binding protein CML23 | 3.63E-31 | 1.72 | 8.73E-144 | 2.06 |
| comp91985_c0 | GDP-L-galactose phosphorylase 2 | 7.26E-31 | 1.57 | 1.23E-113 | 1.49 |
| comp100177_c0 | Peptide methionine sulfoxide reductase B1 | 7.42E-13 | 1.27 | 3.05E-59 | 1.68 |
| comp95166_c0 | Hsp70-Hsp90 organizing protein 2 | 9.99E-14 | 1.10 | 7.41E-55 | 0.91 |
| comp88862_c0 | Pyridoxal biosynthesis protein PDX1 | 7.77E-15 | 1.07 | 3.62E-19 | 0.67 |
| comp80838_c1 | Fatty acid dioxygenase AlphaDOX1 | 1.67E-10 | 1.04 | 1.67E-04 | 0.44 |
| comp99015_c0 | Full = Selenium-binding protein 1 | 9.05E-10 | 1.04 | 4.68E-83 | 1.28 |
| comp101891_c0 | GTP-binding protein TypA/BipA homolog isoform X1 | 2.82E-04 | 1.02 | 2.77E-19 | 1.49 |
| comp100787_c0 | Elongation factor Tu domain 2 | 4.18E-03 | 0.97 | 5.31E-11 | 1.45 |
| comp76346_c0 | Catalase | 2.36E-08 | 0.82 | 4.06E-51 | 1.03 |
| comp73667_c0 | Cationic peroxidase 1 | 2.21E-02 | 0.72 | 1.37E-14 | 1.17 |
| comp66299_c0 | Catalase | 2.08E-05 | 1.00 | ||
| comp124564_c0 | Peroxidase 45 | 7.97E-04 | 1.56 | ||
| comp76486_c0 | Phospholipid hydroperoxide glutathione peroxidase | 5.78E-04 | 0.63 | 6.03E-36 | 1.08 |
| comp88505_c0 | Full = Inositol-3-phosphate synthase | 6.34E-05 | 0.59 | 2.82E-78 | 1.22 |
| comp49695_c0 | Full = Respiratory burst oxidase homolog protein D | 2.01E-04 | 1.02 | ||
| Proline biosynthetic pathway related genes | |||||
| comp32578_c0 | Pyrroline-5-carboxylate synthetase (P5CS) | 8.50E-06 | 1.62 | 4.61E-23 | 2.39 |
| comp48238_c0 | Pyrroline-5-carboxylate synthetase (P5CS) | 3.22E-08 | 1.49 | 4.95E-50 | 2.39 |
| comp96740_c0 | Pyrroline-5-carboxylate synthetase (P5CS) | 4.05E-13 | 0.87 | 6.40E-123 | 1.73 |
| comp95217_c0 | Proline dehydrogenase (ProDH) | 1.41E-40 | −2.26 | 2.57E-279 | −4.04 |
| comp76699_c0 | Proline dehydrogenase (ProDH) | 8.15E-13 | −1.54 | 3.61E-75 | −2.82 |
| comp85493_c0 | Proline dehydrogenase (ProDH) | 2.14E-04 | −1.17 | 2.45E-27 | −2.57 |
| comp94924_c0 | ornithine aminotransferase (OAT) | 5.92E-05 | 0.85 | 2.30E-30 | 0.87 |
| comp94345_c0 | ornithine aminotransferase (OAT) | 8.92E-08 | 0.86 | 7.41E-34 | 0.84 |
| comp100462_c0 | pyrroline-5-carboxylate reductase (P5CR) | 8.15E-03 | 0.32 | ||
| comp93358_c0 | pyrroline-5-carboxylate reductase (P5CR) | 1.93E-05 | 0.38 | ||
