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Table 5 DEGs related to osmotic and oxidative stresses and proline biosynthetic pathway during stem bending

From: Transcriptome profiling of Gerbera hybrida reveals that stem bending is caused by water stress and regulation of abscisic acid

Gene ID

Putative function

Stage 2 vs Stage 0

Stage 4 vs Stage 0

FDR

log2FC

FDR

log2FC

Osmotic stress related genes

 comp170518_c0

Homeobox-leucine zipper protein ATHB 12-like

  

1.63E-09

7.49

 comp88289_c0

Mitochondrial phosphate transporter 3;1

5.60E-03

2.73

6.78E-06

2.61

 comp116208_c0

Serine/threonine-protein kinase SAPK 3

  

8.60E-05

3.01

 comp46146_c0

DEAD-box ATP-dependent RNA helicase 53

  

4.94E-02

1.34

 comp73954_c0

SGF29 tudor-like domain

4.51E-03

1.28

3.42E-02

0.87

 comp56410_c0

Mitochondrial HSO70 isoform

3.56E-15

1.23

1.10E-38

1.16

 comp87549_c0

Lipocalin / cytosolic fatty-acid binding protein

3.74E-16

1.23

1.38E-86

1.23

 comp84431_c0

Mitochondrial HSO70 isoform

8.44E-07

1.12

5.20E-24

1.22

 comp97921_c0

3-ketoacyl-CoA synthase 11

4.31E-05

1.10

1.71E-07

0.91

 comp35369_c0

Calcineurin B-like protein

1.20E-02

1.10

3.49E-05

1.26

 comp87642_c0

Aldehyde dehydrogenase family 7 member B4-like

1.64E-16

1.09

3.25E-62

1.13

 comp88862_c0

Pyridoxal biosynthesis protein PDX1

7.77E-15

1.07

3.62E-19

0.67

 comp88516_c0

Mitochondrial arginine transporter BAC2-like

1.37E-06

0.82

1.49E-30

1.08

 comp74835_c0

Pyrophosphate-energized inorganic pyrophosphatase

  

3.41E-02

1.37

 comp90616_c0

ADIPOR-like receptor CG5315-like

2.20E-03

0.72

2.84E-32

1.20

 comp75402_c0

Fructose-bisphosphate aldolase

  

2.29E-65

1.42

 comp72709_c0

Fructose-bisphosphate aldolase cytoplasmic isozyme

  

1.78E-06

1.35

Oxidative stress related genes

 comp74749_c0

Vacuolar iron transporter homolog

1.81E-24

5.15

2.50E-51

5.29

 comp54647_c0

Peroxidase

5.61E-83

3.62

9.01E-137

3.27

 comp88411_c0

Cationic peroxidase

4.25E-48

3.26

4.26E-73

2.80

 comp44427_c0

MATE efflux family protein FRD3-like

9.69E-58

2.97

1.61E-80

2.60

 comp89738_c0

Heat shock factor protein HSF30

3.42E-19

2.90

1.96E-04

1.18

 comp92757_c0

ATP-dependent Clp protease ATP-binding subunit ClpB homolog 1

1.04E-43

2.55

2.80E-174

2.41

 comp111750_c0

Peroxidase 17-like

1.30E-15

2.48

1.22E-48

3.17

 comp91849_c0

Peroxidase 55

2.99E-47

2.21

9.94E-182

2.62

 comp78537_c0

Calcium-binding protein CML23

3.63E-31

1.72

8.73E-144

2.06

 comp91985_c0

GDP-L-galactose phosphorylase 2

7.26E-31

1.57

1.23E-113

1.49

 comp100177_c0

Peptide methionine sulfoxide reductase B1

7.42E-13

1.27

3.05E-59

1.68

 comp95166_c0

Hsp70-Hsp90 organizing protein 2

9.99E-14

1.10

7.41E-55

0.91

 comp88862_c0

Pyridoxal biosynthesis protein PDX1

7.77E-15

1.07

3.62E-19

0.67

 comp80838_c1

Fatty acid dioxygenase AlphaDOX1

1.67E-10

1.04

1.67E-04

0.44

 comp99015_c0

Full = Selenium-binding protein 1

9.05E-10

1.04

4.68E-83

1.28

 comp101891_c0

GTP-binding protein TypA/BipA homolog isoform X1

2.82E-04

1.02

2.77E-19

1.49

 comp100787_c0

Elongation factor Tu domain 2

4.18E-03

0.97

5.31E-11

1.45

 comp76346_c0

Catalase

2.36E-08

0.82

4.06E-51

1.03

 comp73667_c0

Cationic peroxidase 1

2.21E-02

0.72

1.37E-14

1.17

 comp66299_c0

Catalase

  

2.08E-05

1.00

 comp124564_c0

Peroxidase 45

  

7.97E-04

1.56

 comp76486_c0

Phospholipid hydroperoxide glutathione peroxidase

5.78E-04

0.63

6.03E-36

1.08

 comp88505_c0

Full = Inositol-3-phosphate synthase

6.34E-05

0.59

2.82E-78

1.22

 comp49695_c0

Full = Respiratory burst oxidase homolog protein D

  

2.01E-04

1.02

Proline biosynthetic pathway related genes

 comp32578_c0

Pyrroline-5-carboxylate synthetase (P5CS)

8.50E-06

1.62

4.61E-23

2.39

 comp48238_c0

Pyrroline-5-carboxylate synthetase (P5CS)

3.22E-08

1.49

4.95E-50

2.39

 comp96740_c0

Pyrroline-5-carboxylate synthetase (P5CS)

4.05E-13

0.87

6.40E-123

1.73

 comp95217_c0

Proline dehydrogenase (ProDH)

1.41E-40

−2.26

2.57E-279

−4.04

 comp76699_c0

Proline dehydrogenase (ProDH)

8.15E-13

−1.54

3.61E-75

−2.82

 comp85493_c0

Proline dehydrogenase (ProDH)

2.14E-04

−1.17

2.45E-27

−2.57

 comp94924_c0

ornithine aminotransferase (OAT)

5.92E-05

0.85

2.30E-30

0.87

 comp94345_c0

ornithine aminotransferase (OAT)

8.92E-08

0.86

7.41E-34

0.84

 comp100462_c0

pyrroline-5-carboxylate reductase (P5CR)

  

8.15E-03

0.32

 comp93358_c0

pyrroline-5-carboxylate reductase (P5CR)

  

1.93E-05

0.38

  1. DEGs with |log2FC| ≥1 at least at one stage and FDR ≤ 0.05 were included. |Log2FC| ≥1 was indicated in bold
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BMC Genomics

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