Skip to main content

Advertisement

Table 5 DEGs related to osmotic and oxidative stresses and proline biosynthetic pathway during stem bending

From: Transcriptome profiling of Gerbera hybrida reveals that stem bending is caused by water stress and regulation of abscisic acid

Gene ID Putative function Stage 2 vs Stage 0 Stage 4 vs Stage 0
FDR log2FC FDR log2FC
Osmotic stress related genes
 comp170518_c0 Homeobox-leucine zipper protein ATHB 12-like    1.63E-09 7.49
 comp88289_c0 Mitochondrial phosphate transporter 3;1 5.60E-03 2.73 6.78E-06 2.61
 comp116208_c0 Serine/threonine-protein kinase SAPK 3    8.60E-05 3.01
 comp46146_c0 DEAD-box ATP-dependent RNA helicase 53    4.94E-02 1.34
 comp73954_c0 SGF29 tudor-like domain 4.51E-03 1.28 3.42E-02 0.87
 comp56410_c0 Mitochondrial HSO70 isoform 3.56E-15 1.23 1.10E-38 1.16
 comp87549_c0 Lipocalin / cytosolic fatty-acid binding protein 3.74E-16 1.23 1.38E-86 1.23
 comp84431_c0 Mitochondrial HSO70 isoform 8.44E-07 1.12 5.20E-24 1.22
 comp97921_c0 3-ketoacyl-CoA synthase 11 4.31E-05 1.10 1.71E-07 0.91
 comp35369_c0 Calcineurin B-like protein 1.20E-02 1.10 3.49E-05 1.26
 comp87642_c0 Aldehyde dehydrogenase family 7 member B4-like 1.64E-16 1.09 3.25E-62 1.13
 comp88862_c0 Pyridoxal biosynthesis protein PDX1 7.77E-15 1.07 3.62E-19 0.67
 comp88516_c0 Mitochondrial arginine transporter BAC2-like 1.37E-06 0.82 1.49E-30 1.08
 comp74835_c0 Pyrophosphate-energized inorganic pyrophosphatase    3.41E-02 1.37
 comp90616_c0 ADIPOR-like receptor CG5315-like 2.20E-03 0.72 2.84E-32 1.20
 comp75402_c0 Fructose-bisphosphate aldolase    2.29E-65 1.42
 comp72709_c0 Fructose-bisphosphate aldolase cytoplasmic isozyme    1.78E-06 1.35
Oxidative stress related genes
 comp74749_c0 Vacuolar iron transporter homolog 1.81E-24 5.15 2.50E-51 5.29
 comp54647_c0 Peroxidase 5.61E-83 3.62 9.01E-137 3.27
 comp88411_c0 Cationic peroxidase 4.25E-48 3.26 4.26E-73 2.80
 comp44427_c0 MATE efflux family protein FRD3-like 9.69E-58 2.97 1.61E-80 2.60
 comp89738_c0 Heat shock factor protein HSF30 3.42E-19 2.90 1.96E-04 1.18
 comp92757_c0 ATP-dependent Clp protease ATP-binding subunit ClpB homolog 1 1.04E-43 2.55 2.80E-174 2.41
 comp111750_c0 Peroxidase 17-like 1.30E-15 2.48 1.22E-48 3.17
 comp91849_c0 Peroxidase 55 2.99E-47 2.21 9.94E-182 2.62
 comp78537_c0 Calcium-binding protein CML23 3.63E-31 1.72 8.73E-144 2.06
 comp91985_c0 GDP-L-galactose phosphorylase 2 7.26E-31 1.57 1.23E-113 1.49
 comp100177_c0 Peptide methionine sulfoxide reductase B1 7.42E-13 1.27 3.05E-59 1.68
 comp95166_c0 Hsp70-Hsp90 organizing protein 2 9.99E-14 1.10 7.41E-55 0.91
 comp88862_c0 Pyridoxal biosynthesis protein PDX1 7.77E-15 1.07 3.62E-19 0.67
 comp80838_c1 Fatty acid dioxygenase AlphaDOX1 1.67E-10 1.04 1.67E-04 0.44
 comp99015_c0 Full = Selenium-binding protein 1 9.05E-10 1.04 4.68E-83 1.28
 comp101891_c0 GTP-binding protein TypA/BipA homolog isoform X1 2.82E-04 1.02 2.77E-19 1.49
 comp100787_c0 Elongation factor Tu domain 2 4.18E-03 0.97 5.31E-11 1.45
 comp76346_c0 Catalase 2.36E-08 0.82 4.06E-51 1.03
 comp73667_c0 Cationic peroxidase 1 2.21E-02 0.72 1.37E-14 1.17
 comp66299_c0 Catalase    2.08E-05 1.00
 comp124564_c0 Peroxidase 45    7.97E-04 1.56
 comp76486_c0 Phospholipid hydroperoxide glutathione peroxidase 5.78E-04 0.63 6.03E-36 1.08
 comp88505_c0 Full = Inositol-3-phosphate synthase 6.34E-05 0.59 2.82E-78 1.22
 comp49695_c0 Full = Respiratory burst oxidase homolog protein D    2.01E-04 1.02
Proline biosynthetic pathway related genes
 comp32578_c0 Pyrroline-5-carboxylate synthetase (P5CS) 8.50E-06 1.62 4.61E-23 2.39
 comp48238_c0 Pyrroline-5-carboxylate synthetase (P5CS) 3.22E-08 1.49 4.95E-50 2.39
 comp96740_c0 Pyrroline-5-carboxylate synthetase (P5CS) 4.05E-13 0.87 6.40E-123 1.73
 comp95217_c0 Proline dehydrogenase (ProDH) 1.41E-40 −2.26 2.57E-279 −4.04
 comp76699_c0 Proline dehydrogenase (ProDH) 8.15E-13 −1.54 3.61E-75 −2.82
 comp85493_c0 Proline dehydrogenase (ProDH) 2.14E-04 −1.17 2.45E-27 −2.57
 comp94924_c0 ornithine aminotransferase (OAT) 5.92E-05 0.85 2.30E-30 0.87
 comp94345_c0 ornithine aminotransferase (OAT) 8.92E-08 0.86 7.41E-34 0.84
 comp100462_c0 pyrroline-5-carboxylate reductase (P5CR)    8.15E-03 0.32
 comp93358_c0 pyrroline-5-carboxylate reductase (P5CR)    1.93E-05 0.38
  1. DEGs with |log2FC| ≥1 at least at one stage and FDR ≤ 0.05 were included. |Log2FC| ≥1 was indicated in bold