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Table 1 Genome–wide highly significant SNPs associated with variation in flowering time and photoperiodic response in diverse accessions of B. napus. Photoperiod response was evaluated under long (LD) and short day (SD) conditions in the controlled environment cabinet (CE). QTL marked with * were detected in the SAgS (Skipton/Ag-Spectrum/Skipton) DH population (Raman et al. 2013 [8], 2016 [12, 13, 35])

From: GWAS hints at pleiotropic roles for FLOWERING LOCUS T in flowering time and yield-related traits in canola

Growth Condition Experiment site SNP Chromosome Physical Position on B. napus cv. Darmor assembly P. value for genetic association R2 (%) Physical Distance from candidate gene (Mb) Putative Candidate gene Other flowering time QTL found within 200 Kb regions
LD (CE) Wagga Wagga Bn-A02-p1232964 A02 147990 5.32E-07 4.005696 0.014152 UPSTREAM OF FLC Wagga (Field)
SD (CE) Wagga Wagga Bn-A02-p1232964 A02 147990 1.13E-06 6.162398 0.014152 UPSTREAM OF FLC Wagga (Field)
Field (plots) Condobolin Bn-A02-p1232964 A02 147990 1.25E-06 6.558129 0.014152 UPSTREAM OF FLC Wagga (Field)
LD (CE) Wagga Wagga Bn-A02-p10020231 A02 6858767 4.01E-07 4.096034 0.482858 FT (BnaA02g12130D) *DTF-RV (GH), Biomass 2015 (SAgS DH), Qdtf(f/s).wwai-A2a-SAgS DH
LD (CE) Wagga Wagga Bn-A02-p10096185 A02 6922499 1.47E-06 3.683964 0.54659 FT (BnaA02g12130D) *DTF-RV (GH), Biomass 2015 (SAgS DH), Qdtf(f/s).wwai-A2a-SAgS DH
LD (CE) Wagga Wagga Bn-A02-p10176579 A02 7019192 2.48E-09 5.754962 0.643227 FT (BnaA02g12130D) *DTF-RV (GH), Biomass 2015 (SAgS DH), Qdtf(f/s).wwai-A2a- SAgS DH
LD (CE) Wagga Wagga Bn-A02-p10485644 A02 7344509 7.38E-07 3.901669 0.525739 RAV2 LD (CE)
LD (CE) Wagga Wagga Bn-A02-p10493685 A02 7351405 2.34E-06 3.536863 0.519263 RAV2 LD (CE)
Field (single row) Wagga Wagga Bn-A03-p471570 A03 373818   6.217928 0.140957 TFL1 Field (single row), Field plots