Table 1 Genome–wide highly significant SNPs associated with variation in flowering time and photoperiodic response in diverse accessions of B. napus. Photoperiod response was evaluated under long (LD) and short day (SD) conditions in the controlled environment cabinet (CE). QTL marked with * were detected in the SAgS (Skipton/Ag-Spectrum/Skipton) DH population (Raman et al. 2013 [8], 2016 [12, 13, 35])
Growth Condition | Experiment site | SNP | Chromosome | Physical Position on B. napus cv. Darmor assembly | P. value for genetic association | R2 (%) | Physical Distance from candidate gene (Mb) | Putative Candidate gene | Other flowering time QTL found within 200 Kb regions |
|---|---|---|---|---|---|---|---|---|---|
LD (CE) | Wagga Wagga | Bn-A02-p1232964 | A02 | 147990 | 5.32E-07 | 4.005696 | 0.014152 | UPSTREAM OF FLC | Wagga (Field) |
SD (CE) | Wagga Wagga | Bn-A02-p1232964 | A02 | 147990 | 1.13E-06 | 6.162398 | 0.014152 | UPSTREAM OF FLC | Wagga (Field) |
Field (plots) | Condobolin | Bn-A02-p1232964 | A02 | 147990 | 1.25E-06 | 6.558129 | 0.014152 | UPSTREAM OF FLC | Wagga (Field) |
LD (CE) | Wagga Wagga | Bn-A02-p10020231 | A02 | 6858767 | 4.01E-07 | 4.096034 | 0.482858 | FT (BnaA02g12130D) | *DTF-RV (GH), Biomass 2015 (SAgS DH), Qdtf(f/s).wwai-A2a-SAgS DH |
LD (CE) | Wagga Wagga | Bn-A02-p10096185 | A02 | 6922499 | 1.47E-06 | 3.683964 | 0.54659 | FT (BnaA02g12130D) | *DTF-RV (GH), Biomass 2015 (SAgS DH), Qdtf(f/s).wwai-A2a-SAgS DH |
LD (CE) | Wagga Wagga | Bn-A02-p10176579 | A02 | 7019192 | 2.48E-09 | 5.754962 | 0.643227 | FT (BnaA02g12130D) | *DTF-RV (GH), Biomass 2015 (SAgS DH), Qdtf(f/s).wwai-A2a- SAgS DH |
LD (CE) | Wagga Wagga | Bn-A02-p10485644 | A02 | 7344509 | 7.38E-07 | 3.901669 | 0.525739 | RAV2 | LD (CE) |
LD (CE) | Wagga Wagga | Bn-A02-p10493685 | A02 | 7351405 | 2.34E-06 | 3.536863 | 0.519263 | RAV2 | LD (CE) |
Field (single row) | Wagga Wagga | Bn-A03-p471570 | A03 | 373818 | Â | 6.217928 | 0.140957 | TFL1 | Field (single row), Field plots |