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Table 1 Datasets used to study effect of sequencing depth

From: Impact of sequencing depth and technology on de novo RNA-Seq assembly

SRA Run ID Species Tissue Description Platform # of Spots # of Bases Date Published End Length
SRR1047863 Homo sapiens post-mortem brain (dorsolateral prefrontal cortex / Brodmann area 46) Illumina HiSeq 1000 258 733 827 52 264 233 054 2014-01-08 101 bp
SRR980471 Homo sapiens CD19+ primary cells, hispanic male age 37 Illumina HiSeq 2000 263 034 155 39 981 191 560 2013-09-12 76 bp
SRR1732347 Mus musculus male brain age 8 weeks, strain C57BL/6 J Illumina HiSeq 2000 354 274 087 71 563 365 574 2014-12-23 101 bp
SRR1509508 Drosophila melanogaster adult; strain: y; cn bw sp Illumina HiSeq 2000 140 645 540 28 410 399 080 2014-07-09 101 bp
SRR1523365 Caenorhabditis elegans at least 100 adult worms Illumina HiSeq 2000 228 557 939 45 711 587 800 2014-07-31 100 bp
SRR1178906 Oryza sativa panicle from O. sativa japonica (Nipponbare cultivar) Illumina HiSeq 2000 207 489 217 41 497 843 400 2014-03-03 100 bp
DRR018424 Arabidopsis thaliana 4 day old seedlings Illumina HiSeq 2000 192 531 285 38 891 319 570 2014-11-27 101 bp
SRR1061361 Arabidopsis thaliana leaves – when first flower open Illumina HiSeq 2000 202 019 334 40 807 905 468 2015-07-22 101 bp
  1. All datasets were sourced from the NCBI and DDJB Sequence Read Archives