Table 2 Reference genome and annotation (GFF) sources
From: Impact of sequencing depth and technology on de novo RNA-Seq assembly
Species | RefSeq Assembly and Annotation | Genome (bp) | Total Gaps (bp) | Exome (bp) |
|---|---|---|---|---|
Homo sapiens | GCF_000001405.29_GRCh38.p3 | 3 226 010 022 | 161 368 151 | 120 562 222 |
Mus musculus | GCF_000001635.24_GRCm38.p4 | 2 803 568 840 | 79 356 756 | 114 986 282 |
Drosophila melanogaster | GCF_000001215.4_Release_6_plus_ISO1_MT | 143 726 002 | 1 152 978 | 35 879 647 |
Caenorhabditis elegans | GCF_000002985.6_WBcel235 | 100 286 401 | 0 | 26 801 799 |
Oryza sativa | GCF_000005425.2_Build_4.0 | 382 778 125 | 10 060 004 | 49 757 833 |
Arabidopsis thaliana | GCF_000001735.3_TAIR10 | 119 667 750 | 185 644 | 57 812 822 |