From: Impact of sequencing depth and technology on de novo RNA-Seq assembly
Preprocessing | |||||
---|---|---|---|---|---|
Platform | Name | Raw | Filtered | Mapped | Deduplicated |
DNBseq™ | ERR1831362 | 48 148 821 | 45 828 900 | 44 015 469 | 32 497 907 |
ERR1831363 | 29 782 959 | 28 352 783 | 27 237 354 | 21 102 998 | |
ERR1831364 | 54 940 056 | 52 466 727 | 50 421 993 | 36 693 200 | |
ERR1831365 | 36 073 210 | 34 329 221 | 32 932 438 | 24 745 818 | |
ERR1831366 | 43 664 065 | 41 782 043 | 40 108 615 | 29 250 048 | |
ERR1831367 | 55 025 946 | 52 410 892 | 50 302 197 | 36 153 502 | |
ERR1831368 | 53 296 161 | 50 698 009 | 48 688 107 | 34 475 744 | |
ERR1831369 | 65 455 754 | 62 428 710 | 59 984 288 | 41 622 545 | |
ERR1831370 | 29 774 053 | 28 307 062 | 27 164 676 | 20 606 457 | |
HiSeq | SRR1261168 | 134 921 154 | 104 132 308 | 101 903 998 | 70 430 950 |
SRR1261170 | 72 897 482 | 33 367 214 | 32 597 422 | 27 498 074 | |
SRR950078 | 100 387 010 | 77 761 236 | 73 979 293 | 50 505 406 | |
SRR950080 | 91 781 477 | 69 875 633 | 66 896 955 | 49 310 706 | |
SRR950084 | 125 083 194 | 93 367 543 | 89 192 069 | 61 653 799 | |
DNBseq™ | Total | 416 161 025 | 396 604 347 | 380 855 137 | 277 148 219 |
% Removed | 4.70% | 3.97% | 27.23% | ||
HiSeq | Total | 525 070 317 | 378 503 934 | 364 569 737 | 259 398 935 |
% Removed | 27.91% | 3.68% | 28.85% |