Table 6 Completeness of transcripts assemblies per library
From: Impact of sequencing depth and technology on de novo RNA-Seq assembly
Complete Transcripts Assembled | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Platform | Name | 1Gbp | 2Gbp | 3Gbp | 4Gbp | 5Gbp | 6Gbp | 8Gbp | 10Gbp | 12Gbp | 20Gbp |
DNBseq™ | COMBINED | 2 483 | 3 891 | 4 720 | 5 276 | 5 705 | 5 994 | 6 458 | 6 716 | 6 979 | 7 472 |
ERR1831362 | 2 049 | 3 306 | 4 140 | 4 719 | 5 189 | 5 530 | |||||
ERR1831363 | 1 981 | 3 235 | 4 026 | 4 641 | |||||||
ERR1831364 | 2 052 | 3 393 | 4 253 | 4 805 | 5 187 | 5 527 | |||||
ERR1831365 | 1 997 | 3 295 | 4 125 | 4 667 | |||||||
ERR1831366 | 1 995 | 3 293 | 4 111 | 4 739 | 5 193 | ||||||
ERR1831367 | 2 061 | 3 351 | 4 173 | 4 775 | 5 216 | 5 511 | |||||
ERR1831368 | 1 951 | 3 304 | 4 131 | 4 707 | 5 164 | 5 471 | |||||
ERR1831369 | 2 032 | 3 323 | 4 170 | 4 772 | 5 178 | 5 575 | 5 989 | ||||
ERR1831370 | 1 920 | 3 260 | 4 091 | 4 622 | |||||||
HiSeq | SRR1261168 | 2 363 | 3 696 | 4 483 | 4 987 | 5 439 | 5 720 | 6 304 | 6 688 | 6 933 | |
SRR1261170 | 1 908 | 3 135 | 3 908 | 4 478 | 4 916 | 5 107 | |||||
SRR950078 | 809 | 1 402 | 1 820 | 2 190 | 2 444 | 2 673 | 3 024 | 3 362 | |||
SRR950080 | 982 | 1 620 | 2 126 | 2 504 | 2 816 | 3 094 | 3 471 | ||||
SRR950084 | 936 | 1 573 | 2 068 | 2 433 | 2 722 | 2 985 | 3 379 | 3 666 | |||