Table 1 Details of mapping of RRBS libraries to the porcine genome (Sscrofa11.1) using Bismark (Bowtie 2)
Sample ID | Clean reads | Unique alignments | Mapping efficiency | CpG methylation | Non-CpG methylation |
|---|---|---|---|---|---|
Control_1 | 24181312 | 12123248 | 50.10% | 46.10% | 7.30% |
Control_2 | 32044506 | 15725669 | 49.10% | 44.60% | 9.10% |
Control_3 | 29982045 | 15230863 | 50.80% | 45.90% | 7.80% |
E. coli_3hpc1 | 30859633 | 15493727 | 50.20% | 46.60% | 7.50% |
E. coli_3hpc2 | 34963148 | 17567402 | 50.20% | 45.40% | 8.00% |
E. coli_3hpc3 | 23771692 | 11990617 | 50.40% | 46.10% | 8.30% |
E. coli_24hpc1 | 42369408 | 21430556 | 50.60% | 46.70% | 8.20% |
E. coli_24hpc2 | 28519930 | 13814779 | 48.40% | 44.90% | 7.40% |
E. coli_24hpc3 | 29039945 | 15042857 | 51.80% | 45.50% | 7.70% |