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Table 1 Details of mapping of RRBS libraries to the porcine genome (Sscrofa11.1) using Bismark (Bowtie 2)

From: DNA methylation analysis of porcine mammary epithelial cells reveals differentially methylated loci associated with immune response against Escherichia coli challenge

Sample ID Clean reads Unique alignments Mapping efficiency CpG methylation Non-CpG methylation
Control_1 24181312 12123248 50.10% 46.10% 7.30%
Control_2 32044506 15725669 49.10% 44.60% 9.10%
Control_3 29982045 15230863 50.80% 45.90% 7.80%
E. coli_3hpc1 30859633 15493727 50.20% 46.60% 7.50%
E. coli_3hpc2 34963148 17567402 50.20% 45.40% 8.00%
E. coli_3hpc3 23771692 11990617 50.40% 46.10% 8.30%
E. coli_24hpc1 42369408 21430556 50.60% 46.70% 8.20%
E. coli_24hpc2 28519930 13814779 48.40% 44.90% 7.40%
E. coli_24hpc3 29039945 15042857 51.80% 45.50% 7.70%