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Table 2 Top 10 differentially methylated CpG sites and their associated genes in E. coli 3 hpc and E. coli 24 hpc compared to control

From: DNA methylation analysis of porcine mammary epithelial cells reveals differentially methylated loci associated with immune response against Escherichia coli challenge

CpG site Chr Strand Gene name P value Distance to gene feature (TSS ± bp) Islands/shore
E. coli vs Control
 cg5322871 5 + EFCAB6 2.64E-05 − 58243  
 cg97042458 4 FLG2 5.15E-05 59383 cpg island
 cg51707353 14   1.46E-04 − 16765  
 cg605583 4 CYC1 1.69E-04 3413  
 cg22964888 16 + GDNF 2.10E-04 931 cpg island
 cg3759161 3 SF21 2.22E-04 16920  
 cg95955381 15 + MYO1B 2.23E-04 47142  
 cg76083105 2 GNG7 2.36E-04 28337  
 cg68450973 16 LARP1 2.92E-04 33945 cpg island
 cg190005969 1 SLC38A6 3.20E-04 81855  
E. coli vs Control
 cg24937951 10 + CYB5R1 1.97E-10 − 6265  
 cg77052099 11 + COL4A2 6.26E-06 54975  
 cg63545568 6 SDF4 3.78E-05 − 782  
 cg54274409 12 NTN1 4.06E-05 − 32552 cpg shore
 cg3518148 12 DNAH17 4.98E-05 32968 cpg island
 cg727575 8   6.54E-05 68814 cpg island
 cg3323937 6 GSE1 7.58E-05 26142  
 cg33280374 9 + MMP20 8.26E-05 27673  
 cg123320105 4 + ABCA4 8.94E-05 − 51088  
 cg6288374 2 SF3B2 1.04E-04 5221 cpg island