Table 2 Sequence alignment of pair-end (PE) library, 3 Kb mate-pair (MP) library and 5 Kb MP library to assembly
| Â | PE | 3 Kb | 5 Kb |
|---|---|---|---|
Reads aligned | 96.24% | 98.71% | 98.70% |
Singletons | 0.26% | 0.87% | 0.92% |
Properly paired | 90.81% | 82.99% | 84.42% |
Mapped to different scaffolds | 0.05% | 13.86% | 14.34% |