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Table 2 Sequence alignment of pair-end (PE) library, 3 Kb mate-pair (MP) library and 5 Kb MP library to assembly

From: Whole genome sequence and de novo assembly revealed genomic architecture of Indian Mithun (Bos frontalis)

 PE3 Kb5 Kb
Reads aligned96.24%98.71%98.70%
Singletons0.26%0.87%0.92%
Properly paired90.81%82.99%84.42%
Mapped to different scaffolds0.05%13.86%14.34%