Table 2 Differentially expressed miRNAs. MiRNAs whose expression was different in lactating mammary glands of Holstein (H) and Montbéliarde (M) cows. afor n = 5 and bfor n = 6. MiRNAs with higher abundance in Holstein cows are in italic and miRNAs with more than 20 reads on average are in bold. Means correspond to the mean of normalized read counts
Mean reads | log2FC | FDR | ||
|---|---|---|---|---|
Ha | Mb | (M/H) | ||
bta-miR-7 | 193.31 | 107.92 | −0.85 | 9.33E-04 |
bta-miR-16a | 14054.01 | 8193.46 | −0.78 | 1.16E-04 |
bta-miR-19a | 144.51 | 85.90 | −0.75 | 3.64E-02 |
bta-miR-19b | 1641.70 | 1085.81 | −0.59 | 1.88E-02 |
bta-miR-25 | 15748.75 | 20362.65 | 0.37 | 2.20E-02 |
bta-miR-30e-5p | 39192.39 | 30598.24 | −0.36 | 3.64E-02 |
bta-miR-100 | 5606.75 | 11221.56 | 1.00 | 3.64E-02 |
bta-miR-146b | 4687.51 | 14263.31 | 1.61 | 4.24E-02 |
bta-miR-186 | 71355.31 | 42157.25 | −0.76 | 3.92E-04 |
bta-miR-199c | 43.22 | 79.99 | 0.88 | 4.27E-02 |
bta-miR-362-5p | 139.50 | 75.42 | −0.88 | 3.80E-03 |
bta-miR-409a | 8.44 | 31.57 | 1.93 | 4.35E-03 |
bta-miR-455-5p | 95.95 | 177.76 | 0.88 | 3.07E-02 |
bta-miR-504 | 74.54 | 168.71 | 1.18 | 4.00E-02 |
bta-miR-11978 | 23.63 | 10.28 | −1.23 | 5.11E-02 |
bta-miR-1271 | 75.38 | 163.79 | 1.12 | 3.64E-02 |
bta-miR-1388-3p | 105.46 | 233.08 | 1.14 | 4.32E-03 |
bta-miR-1911 | 20.40 | 2.07 | −3.18 | 3.64E-02 |
bta-miR-2285ba | 40.26 | 20.70 | −0.93 | 3.64E-02 |
bta-miR-2419-3p | 10.19 | 0.72 | −4.11 | 3.64E-02 |
bta-miR-6523b | 14.39 | 63.09 | 2.12 | 4.78E-02 |
chr21_22372_star | 232.16 | 524.19 | 1.17 | 3.64E-02 |