Table 2 Runtime and memory usage of DiscoverY and CQ
From: DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies
DiscoverY: female+male mode | DiscoverY: female_only mode | Chromosome Quotient | ||||
|---|---|---|---|---|---|---|
Stage | Time | Max memory | Time | Max memory | Time | Max memory |
Generating female k-mers Bloom Filter | 3 h 20 m | 6 Gb | 3 h 20 m | 6 Gb | N/A | N/A |
Counting male k-mers abundance (DSK) | 4 h 8 m | 9 Gb | N/A | N/A | N/A | N/A |
Computing proportion and coverage | 9 h 2 m | 307 Gb | 3 h 49 m | 5 Gb | N/A | N/A |
Filtering of Y-contigs | 5 m | < 1Gb | 5 m | < 1Gb | N/A | N/A |
Total | 16 h 35 m | 307 Gb | 7 h 14 m | 6 Gb | 14 h 2 m | 5 Gb |