Differences in gene expression in whitefly associated with CYSDV-infected and virus-free melon, and comparison with expression in whiteflies fed on ToCV- and TYLCV-infected tomato

Table 2 Top differentially expressed genes (DEGs) in whitefly (B. tabaci MEAM1) in response to feeding on CYSDV-infected or virus-free (VF) melon plants for 72 h (A) and 7 days (B)

A
Gene ID	Annotation	VF72^a	CYSDV72^b	FC^c	FDR^d
Bta07301	Cuticle protein 16.5 like	0.65	10.61	16.3	8.26E-05
Bta07683	Unknown protein	1.92	13.56	7.06	3.24E-03
Bta14107	Cuticle protein 1	3.44	11.01	3.2	1.68E-03
Bta01566	Unknown protein	5.24	15.71	3	8.06E-03
Bta11224	Unknown protein	167.14	452.74	2.71	8.32E-08
Bta00243	Muscle-specific protein 300 kDa, isoform I	23.22	47.15	2.03	3.60E-03
Bta14312	Sucrase	12.70	5.13	0.4	1.40E-03
Bta10448	Unknown protein	31.07	12.95	0.42	2.72E-02
Bta13678	Unknown protein	20.90	9.06	0.43	6.28E-03
Bta14422	Alpha-glucosidase	20.00	8.82	0.44	4.59E-10
Bta05871	von Willebrand factor A domain-containing protein 2	20.17	9.43	0.47	1.31E-02
Bta07312	Ammonium transporter, putative	35.53	17.45	0.49	1.27E-06
B
Gene ID	Annotation	VF7d^a	CYSDV7d^b	FC^c	FDR
Bta07301	Cuticle protein 16.5 like	0.71	13.01	18.38	8.62E-04
Bta07683	Unknown protein	1.34	15.72	11.7	8.00E-04
Bta01566	Unknown protein	3.22	22.48	6.99	7.85E-04
Bta14107	Cuticle protein 1	3.76	12.88	3.42	1.20E-02
Bta11224	Unknown protein	97.30	277.91	2.86	3.23E-06
Bta01518	Unknown protein	5.88	13.43	2.28	1.20E-02
Bta12169	Unknown protein	5.15	11.70	2.27	4.22E-02
Bta08648	Dumpy, isoform AA	5.49	12.14	2.21	1.91E-03
Bta15753	Unknown protein	20.55	45.16	2.2	1.60E-03
Bta13640	Chemosensory protein	27.97	61.04	2.18	2.46E-02

DEGs were selected based on criteria of FPKM> 10 with FC > 2 for up-regulated DEGs and FC < 0.5 for down-regulated DEGs
^aFPKM values from virus-free (VF) whiteflies at 72 h
^bFPKM values from CYSDV whiteflies at 72 h
^cFold change (FC) for CYSDV vs. virus-free (VF) whiteflies
^dFalse Discovery Rate (FDR) for three technical replicates of each of three biological replicates

ISSN: 1471-2164