Table 4 Genes of E. alkalisoli YIC4027 related to protein secretion systems
System | Gene identification | Localization |
|---|---|---|
Type I secretion | ||
 tolC | EKH55_1288 | Chromosome |
 prtDE | EKH55_2900 to 2901 | Chromosome |
 prsDE | EKH55_5479 to 5480 | pYIC4027b |
Type III secretion (T3SS) | ||
 T3SS-I | ||
  rhcC1 rhcC2 rhcJ rhcL rhcN rhcQRSTUV ttsI nopX | EKH55_5609 to 5632 | pYIC4027a |
 T3SS-II | ||
  rhcC1 rhcC2 rhcJ rhcL rhcN rhcQRSTUVZ | EKH55_0998 to 1018 | Chromosome |
Type IV secretion (T4SS) | ||
 T4SS-I | ||
  virB1-B11 virD4 virB1 | EKH55_5752 to 5930 | pYIC4027a |
 T4SS-II | ||
  virB1-B11 virD4 virB2–3 | EKH55_4625 to 4740 | pYIC4027b |
Twin-arginine translocation (TAT) system | ||
 tatA, tatB, tatC | EKH55_1307 to 1309 | Chromosome |
Secretion system | ||
 secB | EKH55_3274 | Chromosome |
 secD | EKH55_0177 | Chromosome |
 secE | EKH55_1104 | Chromosome |
 secY | EKH55_1142 | Chromosome |
 secG | EKH55_1213 | Chromosome |
 secD/secF | EKH55_1317 | Chromosome |
 secA | EKH55_2587 | Chromosome |
 yajC | EKH55_1316 | Chromosome |
 yidC | EKH55_0075 | Chromosome |
 lebB | EKH55_0711 | Chromosome |
SRP (signal recognition particle) components | ||
 ftsY | EKH55_3169 | Chromosome |
 ffh | EKH55_3175 | Chromosome |