Table 1 The 95 genomes validated after selection based on PCA (see text). Column ‘Status’ states whether genome is complete or gives number of contigs if not
Strain | Isolation | Host Taxonomy | Lineage | Location | Reference | Source | Accession/Project | Status* |
|---|---|---|---|---|---|---|---|---|
bilvae_NCPPB3213_India | 1980 | Rosids:Sapindales:Rutaceae | outgroup | India | [14] | NCBI | CDHI01 | 60 |
glycines_CFBP2526_Sudan | 1956 | Rosids:Fabales:Fabaceae | outgroup | Sudan | [23] | NCBI | AUWO01 | complete |
glycines_CFBP7119_Brazil | 1981 | Rosids:Fabales:Fabaceae | outgroup | Brazil | [23] | NCBI | NZ_CM002264.1 | complete |
malv_X20_Burkina | ? | Rosids:Malvales:Malvaceae | outgroup | Burkina Faso | [24] | NCBI | NZ_CM002029.1 | complete |
mang_LG81-27_Reunion | 2009 | Rosids:Sapindales:Anacardiaceae | outgroup | Reunion | [25] | NCBI | PEBZ01 | 6 |
P._cissicola_LMG21719 | 1974 | Rosids:Vitales:Vitaceae | outgroup | Japan | [21] | NCBI | LOJT01 | 313 |
X._axon._bauhiniae_LMG548 | 1961 | Rosids:Fabales:Fabaceae | outgroup | India | [21] | NCBI | LOKR | 192 |
X._axon._cajani_LMG558 | 1950 | Rosids:Fabales:Fabaceae | outgroup | India | [21] | NCBI | LOKQ01 | 312 |
X._axon._clitoriae_LMG9045 | 1974 | Rosids:Fabales:Fabaceae | outgroup | India | [21] | NCBI | LOKA01 | 91 |
X._axon._khayae_LMG753 | 1957 | Rosids:Sapindales:Meliaceae | outgroup | Sudan | [21] | NCBI | LOKN01 | 354 |
X._axon._martyniicola_LMG9049 | 1958 | Asterids:Lamiales:Martyniaceae | outgroup | India | [21] | NCBI | LOJX01 | 76 |
X._axon._melhusii_LMG9050 | 1961 | Asterids:Lamiales:Lamiaceae | outgroup | India | [21] | NCBI | LOJW01 | 101 |
X._axon._punicae_LMG_859 | 1959 | Rosids:Myrtales:Lythraceae | outgroup | India | [21] | NCBI | CAGJ01 | 217 |
X._camp._azadirachtae_LMG543 | 1971 | Rosids:Sapindales:Meliaceae | outgroup | India | [21] | NCBI | LOKS01 | 236 |
X._camp._centellae_LMG9044 | 1979 | Asterids:Apiales:Apiaceae | outgroup | India | [21] | NCBI | LOJR01 | 315 |
X._camp._durantae_LMG696 | 1956 | Asterids:Lamiales:Verbenaceae | outgroup | India | [21] | NCBI | LOKP01 | 187 |
X._camp._leeana_LMG9048 | 1967 | Rosids:Vitales:Vitaceae | outgroup | India | [21] | NCBI | LOJY01 | 92 |
X._camp._thespesiae_LMG9057 | 1978 | Rosids:Malvales:Malvaceae | outgroup | India | [21] | NCBI | LOJU01 | 93 |
X._camp._viticola | 1972 | Rosids:Vitales:Vitaceae | outgroup | India | [21] | NCBI | CBZT01 | 50 |
X._camp._vitiscarnosae_LMG939 | 1962 | Rosids:Vitales:Vitaceae | outgroup | India | [21] | NCBI | LOKI01 | 105 |
X._camp._vitistrifoliae_LMG940 | 1961 | Rosids:Vitales:Vitaceae | outgroup | India | [21] | NCBI | LOKH01 | 184 |
X._camp._vitiswoodrowii_LMG954 | 1961 | Rosids:Vitales:Vitaceae | outgroup | India | [21] | NCBI | LOKG01 | 102 |
Xc_03-1638-1-1_Argentina_A | 2003 | Rosids:Sapindales:Rutaceae | A | Argentina | [26] | NCBI | GCA_002952295.1 | complete |
Xc_306_Brazil_A | 1997 | Rosids:Sapindales:Rutaceae | A | Brazil | [9] | NCBI | NC_003919.1 | complete |
Xc_5208_USA_A | 2002 | Rosids:Sapindales:Rutaceae | A | USA | [13] | NW | NZ_CP009028.1 | complete |
Xc_AS270_Saudi_Arabia_As | 1988 | Rosids:Sapindales:Rutaceae | A* | Saudi Arabia | [13] | NW | GCA_000950845.1 | 29 |
Xc_AS8_Saudi_Arabia_As | ? | Rosids:Sapindales:Rutaceae | A* | Saudi Arabia | [13] | NW | GCA_000950875.1 | 32 |
Xc_AS9_Saudi_Arabia_As | ? | Rosids:Sapindales:Rutaceae | A* | Saudi Arabia | [13] | NW | GCA_000950855.1 | 31 |
Xc_Aw12879_USA_Aw | 2000 | Rosids:Sapindales:Rutaceae | Aw | USA | [27] | NCBI | NC_020815.1 | complete |
Xc_AW13_USA_Aw | 2003 | Rosids:Sapindales:Rutaceae | Aw | USA | [13] | NW | NZ_CP009031.1 | complete |
Xc_AW14_USA_Aw | 2005 | Rosids:Sapindales:Rutaceae | Aw | USA | [13] | NW | NZ_CP009034.1 | complete |
Xc_AW15_USA_Aw | 2005 | Rosids:Sapindales:Rutaceae | Aw | USA | [13] | NW | NZ_CP009037.1 | complete |
Xc_AW16_USA_Aw | 2005 | Rosids:Sapindales:Rutaceae | Aw | USA | [13] | NW | NZ_CP009040.1 | complete |
Xc_BL18_USA_A | 2011 | Rosids:Sapindales:Rutaceae | A | USA | [13] | NW | NZ_CP009025.1 | complete |
Xc_C40_Reunion_A | 1988 | Rosids:Sapindales:Rutaceae | A | Reunion | [14] | Pruvost | CCWX01 | complete |
Xc_CFBP2852_India_A | ? | Rosids:Sapindales:Rutaceae | A | India | [14] | Pruvost | CCWI01 | 57 |
Xc_CFBP2911_Pakistan_As | 1984 | Rosids:Sapindales:Rutaceae | A* | Pakistan | [14] | Pruvost | CCWD01 | 87 |
Xc_FB19_USA_A | 2011 | Rosids:Sapindales:Rutaceae | A | USA | [13] | NW | NZ_CP009022.1 | complete |
Xc_FDC1083_Brazil_A | 1980 | Rosids:Sapindales:Rutaceae | A | Brazil | [14] | Pruvost | CCVZ01 | 42 |
Xc_FDC1662_Brazil_A | 2011 | Rosids:Sapindales:Rutaceae | A | Brazil | This study | BIGA | LAUN00000000 | 85 |
Xc_FDC1682_Oman_As | 1986 | Rosids:Sapindales:Rutaceae | A* | Oman | This study | BIGA | LAUG00000000 | 168 |
Xc_FDC217_Brazil_A | 2003 | Rosids:Sapindales:Rutaceae | A | Brazil | [14] | Pruvost | CCWY01 | 41 |
Xc_FDC628_Brazil_A | 2001 | Rosids:Sapindales:Rutaceae | A | Brazil | This study | BIGA | LAUE00000000 | 101 |
Xc_FDC636_Brazil_A | 1996 | Rosids:Sapindales:Rutaceae | A | Brazil | This study | BIGA | LAUQ00000000 | 127 |
Xc_FDC654_Brazil_A | 1999 | Rosids:Sapindales:Rutaceae | A | Brazil | This study | BIGA | LAUF00000000 | 114 |
Xc_FDC828_Brazil_A | 1997 | Rosids:Sapindales:Rutaceae | A | Brazil | This study | BIGA | LAUP00000000 | 121 |
Xc_gd2_China_A | 2011 | Rosids:Sapindales:Rutaceae | A | China | [13] | NW | NZ_CP009019.1 | complete |
Xc_gd3_China_A | 2011 | Rosids:Sapindales:Rutaceae | A | China | [13] | NW | NZ_CP009016.1 | complete |
Xc_JF90-2_Oman_As | 1986 | Rosids:Sapindales:Rutaceae | A* | Oman | [14] | Pruvost | CCWA01 | 85 |
Xc_JF90-8_Oman_Aw | 2002 | Rosids:Sapindales:Rutaceae | Aw | Oman | [14] | Pruvost | CCWB01 | 30 |
Xc_JJ10-1_Mauritius_A | 1985 | Rosids:Sapindales:Rutaceae | A | Mauritius | [14] | Pruvost | CDDV01 | 258 |
Xc_JJ238-10_Maldives_A | 1987 | Rosids:Sapindales:Rutaceae | A | Maldives | [14] | Pruvost | CCWC01 | 56 |
Xc_JJ238-24_Thailand_As | 1989 | Rosids:Sapindales:Rutaceae | A* | Thailand | [14] | Pruvost | CCVX01 | 52 |
Xc_JK2-10_Saudi_Arabia_As | 1988 | Rosids:Sapindales:Rutaceae | A* | Saudi Arabia | [14] | NCBI | CCWV01 | complete |
Xc_JK4-1_China_A | 1985 | Rosids:Sapindales:Rutaceae | A | China | [14] | Pruvost | CDMR01 | 320 |
Xc_JM35-2_Saudi_Arabia_As | 1992 | Rosids:Sapindales:Rutaceae | A* | Saudi Arabia | [14] | Pruvost | CDMS01 | 339 |
Xc_JS581_Iran_As | 1997 | Rosids:Sapindales:Rutaceae | A* | Iran | [14] | Pruvost | CDAW01 | 358 |
Xc_JS584_Iran_As | 1997 | Rosids:Sapindales:Rutaceae | A* | Iran | [14] | Pruvost | CCWF01 | 61 |
Xc_JW160-1_Bangladesh_A | 2000 | Rosids:Sapindales:Rutaceae | A | Bangladesh | [14] | Pruvost | CCWH01 | 88 |
Xc_jx4_China_A | 2011 | Rosids:Sapindales:Rutaceae | A | China | [13] | NW | NZ_CP009013.1 | complete |
Xc_jx5_China_A | 2011 | Rosids:Sapindales:Rutaceae | A | China | [13] | NW | NZ_CP009010.1 | complete |
Xc_jx-6_China_A | 2014 | Rosids:Sapindales:Rutaceae | A | China | Chen et al. (unpublished) | NCBI | NZ_CP011827.2 | complete |
Xc_LB100-1_Seychelles_A | 2005 | Rosids:Sapindales:Rutaceae | A | Seychelles | [14] | Pruvost | CDAV01 | 299 |
Xc_LC80_Mali_A | 2006 | Rosids:Sapindales:Rutaceae | A | Mali | [14] | Pruvost | CCWJ01 | 51 |
Xc_LD71a_Cambodia_As | 2007 | Rosids:Sapindales:Rutaceae | A* | Cambodia | [14] | Pruvost | CCWE01 | 49 |
Xc_LE20-1_Ethiopia_As | 2008 | Rosids:Sapindales:Rutaceae | A* | Ethiopia | [14] | Pruvost | CCWK01 | 41 |
Xc_LG115_India_Aw | 2007 | Rosids:Sapindales:Rutaceae | Aw | India | [14] | Pruvost | CDAY01 | 377 |
Xc_LG117_Bangladesh_A | 2009 | Rosids:Sapindales:Rutaceae | A | Bangladesh | [14] | Pruvost | CDAX01 | 338 |
Xc_LG98_Bangladesh_A | 2006 | Rosids:Sapindales:Rutaceae | A | Bangladesh | [14] | Pruvost | CDBA01 | 323 |
Xc_LH201_Reunion_A | 2010 | Rosids:Sapindales:Rutaceae | A | Reunion | [26] | NCBI | GCA_001922105.1 | complete |
Xc_LH276_Reunion_A | 2010 | Rosids:Sapindales:Rutaceae | A | Reunion | [26] | NCBI | GCA_001922065.1 | complete |
Xc_LH37-1_Senegal_A2 | 2010 | Rosids:Sapindales:Rutaceae | A | Senegal | [14] | Pruvost | CDAS01 | 417 |
Xc_LJ207-7_Reunion_A | 2012 | Rosids:Sapindales:Rutaceae | A | Reunion | [26] | NCBI | GCA_001922085.1 | complete |
Xc_LL074-4_Martinique_A | 2014 | Rosids:Sapindales:Rutaceae | A | Martinique | [26] | NCBI | GCA_001922045.1 | complete |
Xc_LM180_Argentina_A | 2003 | Rosids:Sapindales:Rutaceae | A | Argentina | [28] | NCBI | GCA_001939985.1 | complete |
Xc_LM199_Argentina_A | 2015 | Rosids:Sapindales:Rutaceae | A | Argentina | [28] | NCBI | GCA_001939965.1 | complete |
Xc_LMG9322_USA_A | 1986 | Rosids:Sapindales:Rutaceae | A | USA | [14] | Pruvost | CCVY01 | 46 |
Xc_mf20_USA_A | 2011 | Rosids:Sapindales:Rutaceae | A | USA | [13] | NW | NZ_CP009007.1 | complete |
Xc_MN10_USA_A | 2005 | Rosids:Sapindales:Rutaceae | A | USA | [13] | NW | NZ_CP009004.1 | complete |
Xc_MN11_USA_A | ? | Rosids:Sapindales:Rutaceae | A | USA | [13] | NW | NZ_CP009001.1 | complete |
Xc_MN12_USA_A | 1997 | Rosids:Sapindales:Rutaceae | A | USA | [13] | NW | NZ_CP008998.1 | complete |
Xc_NCPPB3562_India_A2 | 1988 | Rosids:Sapindales:Rutaceae | A | India | [14] | Pruvost | CCXZ01 | 98 |
Xc_NCPPB3607_India_As | 1988 | Rosids:Sapindales:Rutaceae | A* | India | [14] | Pruvost | CDAT01 | 432 |
Xc_NCPPB3608_India_Aw | 1988 | Rosids:Sapindales:Rutaceae | Aw | India | [14] | Pruvost | CCWG01 | 55 |
Xc_NCPPB3612_India_A2 | 1988 | Rosids:Sapindales:Rutaceae | A | India | [14] | Pruvost | CDAQ01 | 426 |
Xc_NIGEB-386_Iran_As | 2009 | Rosids:Sapindales:Rutaceae | A* | Iran | [29] | NCBI | JRON01 | 183 |
Xc_NIGEB-88_Iran_As | 2009 | Rosids:Sapindales:Rutaceae | A* | Iran | [30] | NCBI | LJGA01 | 18 |
Xc_NT17_USA_A | 2011 | Rosids:Sapindales:Rutaceae | A | USA | [13] | NW | NZ_CP008995.1 | complete |
Xc_TX160042_USA_Aw | 2015 | Rosids:Sapindales:Rutaceae | Aw | USA | [31] | NCBI | GCA_002139975.1 | complete |
Xc_TX160149_USA_Aw | 2015 | Rosids:Sapindales:Rutaceae | Aw | USA | [31] | NCBI | GCA_002139975.1 | complete |
Xc_TX160197_USA_Aw | 2015 | Rosids:Sapindales:Rutaceae | Aw | USA | [31] | NCBI | TX160197 | complete |
Xc_UI6_China_A | 2011 | Rosids:Sapindales:Rutaceae | A | China | [13] | NW | NZ_CP008992.1 | complete |
Xc_UI7_China_A | 2011 | Rosids:Sapindales:Rutaceae | A | China | [13] | NW | NZ_CP008989.1 | complete |
Xc_X2003-3218_USA_Aw | 2003 | Rosids:Sapindales:Rutaceae | Aw | USA | [14] | Pruvost | CCWL01 | 52 |
Xc_Xac29-1_China_A | ? | Rosids:Sapindales:Rutaceae | A | China | NCBI | NCBI | GCA_000348585.1 | complete |