Table 3 Dating models implemented, respective 95% HPDs, and their relative fit (by AICM and ΔAICM). Models are ranked decreasingly from top to bottom (lower AICM values corresponding to better fit)
BEAST run | tMRCA (XCP) | Origin (XCC) | Diversification (XCC) | AICM | ΔAICM | ΔAICM (compared to Original) |
|---|---|---|---|---|---|---|
Substitution model | [16206.85, 22464.93] | [7194.44, 10025.40] | [2559.78, 3791.96] | 4416757,966 | - | - |
Original | [27036.54, 46090.070] | [8916.42, 13441.22] | [3335.72, 5568.49] | 4417749,144 | -991,18 | - |
Uniform | [19602.58, 35489.83] | [8424.34, 14096.51] | [2972.82, 5663.46] | 4417754,423 | -996,46 | 5,28 |
Original (BEAST2) | [41056.62, 53663.97] | [35100.86, 45893.22] | [32245.31, 42118.59] | 4417757,026 | -999,06 | 7,88 |
Faster rate | [242.83, 447.08] | [141.46, 259.28] | [69.37, 130.39] | 4417766,797 | -1008,83 | 17,65 |
Skyline | [18862.65, 29544.91] | [4195.23, 6915.09] | [1820.51, 3132.74] | 4417851,234 | -1093,27 | 102,09 |
Tree_search | [29956.02, 42231.86] | [10006.82, 13174.56] | [3111.25, 5492.1] | 4418106,267 | -1348,30 | 357,12 |
No_Rec | [21135.18, 38328.66] | [5865.59, 7673.84] | [1730.30, 2565.84] | - | - | - |
*** Conservative time spans *** | ||||||
tMRCA (XCP) = | [16206.85, 46090.070] | |||||
Origin (XCC) = | [5865.59, 14096.51] | |||||
Diversification (XCC) = | [1730.30, 5663.46] | |||||