Skip to main content

Advertisement

Table 3 Dating models implemented, respective 95% HPDs, and their relative fit (by AICM and ΔAICM). Models are ranked decreasingly from top to bottom (lower AICM values corresponding to better fit)

From: Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses

BEAST run tMRCA (XCP) Origin (XCC) Diversification (XCC) AICM ΔAICM ΔAICM (compared to Original)
Substitution model [16206.85, 22464.93] [7194.44, 10025.40] [2559.78, 3791.96] 4416757,966 - -
Original [27036.54, 46090.070] [8916.42, 13441.22] [3335.72, 5568.49] 4417749,144 -991,18 -
Uniform [19602.58, 35489.83] [8424.34, 14096.51] [2972.82, 5663.46] 4417754,423 -996,46 5,28
Original (BEAST2) [41056.62, 53663.97] [35100.86, 45893.22] [32245.31, 42118.59] 4417757,026 -999,06 7,88
Faster rate [242.83, 447.08] [141.46, 259.28] [69.37, 130.39] 4417766,797 -1008,83 17,65
Skyline [18862.65, 29544.91] [4195.23, 6915.09] [1820.51, 3132.74] 4417851,234 -1093,27 102,09
Tree_search [29956.02, 42231.86] [10006.82, 13174.56] [3111.25, 5492.1] 4418106,267 -1348,30 357,12
No_Rec [21135.18, 38328.66] [5865.59, 7673.84] [1730.30, 2565.84] - - -
*** Conservative time spans ***
 tMRCA (XCP) = [16206.85, 46090.070]      
 Origin (XCC) = [5865.59, 14096.51]      
 Diversification (XCC) = [1730.30, 5663.46]