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Table 4 Lists of muscle genes identified as common predictors for feed efficiency traits

From: Investigation of muscle transcriptomes using gradient boosting machine learning identifies molecular predictors of feed efficiency in growing pigs

Traits

Common VIP

RFI/FCR

ANKRD1; ANKRD42; ARF3; BCL2; BLCAP; BNC2; C15orf40; CNN1; CREBRF; CSRNP3; DMTF1; EPHX1; EZR; FAM43B; FKBP5; FRAS1; GATA6; GPR153; HOXD3; IL4R; INS-IGF2; LAMA4; MACF1; MBTPS1; MX2; NRP1; NTN1; PDZD2; PFDN4; PHKB; POR; PSTK; QRSL1; RASL11B; RBP1; RPGR; SAMD4A; SDR39U1; SEPN1; SERINC3; SLC41A1; SOCS6; SYNE2; TICAM2; TIPARP; TPI1; TRIM38; UGDH; UROS; ZNF280D; ZNF443; ZNF644

RFI/FCRe

AKAP12; ANKRD1; DMTF1; EZR; FCN2; FKBP5; MACF1; NCOA6; NGB; OAZ3; SLC35A2; TNFRSF21; ZFAND3; ZFPM2; ZNF644

FCR/FCRe

ANKRD1; ATP1B1; BVES; C4orf21; CCDC91; DMTF1; EZR; FKBP5; FOXN3; FYN; GMDS; GZMK; HIST1H2BD; HSPA2; KCNJ2; LOC100505669; MACF1; MEF2A; MTHFD1L; RAB28; RPL6; SEMA4A; SERPINA1; WWP1; ZNF644

RFI/FCR/FCRe

ANKRD1; DMTF1; EZR; FKBP5; MACF1; ZNF644

  1. Very important expressed muscle genes (VIP) identified as important for prediction of residual feed intake (n = 384 VIP), feed conversion ratio (FCR, n = 421 VIP) or net energy based-feed conversion ratio (FCRe, n = 318 VIP) were indicated. Genes indicated in bold font were further considered for qPCR analysis
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BMC Genomics

ISSN: 1471-2164

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