Table 3 Differentially expressed predicted miRNAs and barley mapped reads with homology to miRBase miRNAs
From: Correction to: small RNA discovery in the interaction between barley and the powdery mildew pathogen
Predicted miRNA or read | Sequence | miRBase match | Number of predicted barley copies | DE time points (and log2 fold changes) | miRBase blastn overlap | Mismatches |
|---|---|---|---|---|---|---|
DE barley mapped read | TCGGACCAGGCTTCATGCCCC | miR165 | NA | bln1 16 HAI (-2.55), bln1 20 HAI (-2.39), mla6 20 HAI (-1.77), rar3 20 HAI (-2.14), bln1 24 HAI (-2.47), mla6 24 HAI (-2.02), bln1 48 HAI (-2.41), mla6 48 HAI (-1.78) |
| 1 |
DE barley mapped read | TTCGGACCAGGCTTCCTTCCC | miR166 | NA | mla6 48 HAI (1.92) |
| 2 |
DE barley mapped read | TGGGACCAGGCTTCATTCCCC | miR166 | NA | bln1 20 HAI (-2.24), rar3 20 HAI (-1.71) |
| 1 |
DE barley mapped read | TCGGACCAGGGTTCATTCCCC | miR166 | NA | bln1 48 HAI (-2.31), mla6 48 HAI (-1.80) |
| 1 |
DE barley mapped read | TTCGGACCAGGCTTCAGTCCC | miR166 | NA | rar3 48 HAI (-2.10) |
| 2 |
DE predicted miRNA | ACACAAACCGGGACTAAAG | miR2120 | 9 | mla6 20 HAI (1.59) |
| 2 |
DE predicted miRNA | GTGTTCTCAGGTCGCCCCCGC | miR398 | 2 | mla6 32 HAI (2.03) |
| 1 |
DE predicted miRNA | AGAACAGAGAATGGCGATAGACTC | miR398 | 1 | mla6 0 HAI (1.63), mla6 20 HAI (1.72), mla6 24 HAI (1.66), mla6 48 HAI (1.93) |
| 4 |
DE barley mapped read | TGTGTTCTCAGGTCGCCCCCG | miR398 | NA | mla6 24 HAI (1.71), mla6 32 HAI (2.57) |
| 0 |
DE predicted miRNA | TCCTGTGCCTGCCTCTTCCAT | miR528 | 1 | mla6 20 HAI (1.97), mla6 24 HAI (2.27), mla6 32 HAI (2.18) |
| 1 |
DE barley mapped read | TCCTGTGCCTGCCTCTTCCAT | miR528 | NA | mla6 24 HAI (2.07), mla6 32 HAI (2.19) |
| 1 |
DE barley mapped read | TGGAAGGGGCATGCAGAGGA | miR528 | NA | mla6 32 HAI (1.86) |
| 0 |
DE barley mapped read | TGGAAGGGGCATGCAGAGGAG | miR528 | NA | mla6 16 HAI (2.20), mla6 20 HAI (2.40), mla6 24 HAI (2.21), mla6 32 HAI (2.09) |
| 0 |
DE barley mapped read | CCTGTGCCTGCCTCTTCCATT | miR528 | NA | mla6 0 HAI (1.99) |
| 0 |
DE predicted miRNA | ATTTTGCTTCGTATGTAGACT | none | 17 | mla6 0 HAI (1.97) | none | NA |
DE predicted miRNA | TATTAGTTGACAGAGGGAGTA | none | 5 | mla6 48 HAI (-1.77), mla6- bln1 48 HAI (-2.44), bln1 48 HAI (-2.40) | none | NA |
DE predicted miRNA | AACTAGTACTACTCTAATGTGCCT | none | 3 | mla6 0 HAI (-1.07) | none | NA |
DE predicted miRNA | GCTTTCATAGCTCAGTTGGTTAGAGCACCCG | none | 1 | bln1 32 HAI (1.64) | none | NA |
DE predicted miRNA | AATTTGAACTGTGAAACT | none | 1 | mla6 0 HAI (1.46), mla6 20 HAI (1.76), mla6 24 HAI (1.56) | none | NA |
