Table 1 Summary of the RNA-seq data in this study yielded from Illumina Hiseq2500 platform
Sample | Raw reads (nt) | Clean reads (nt) | Clean data (Gb) | Q20 percentage | Q30 percentage | GC percentage | Total mapping rate | Exon mapping rate | Intron mapping rate | Intergenic mapping rate |
|---|---|---|---|---|---|---|---|---|---|---|
YP1_1 | 25,695,596 | 25,307,873 | 7.59Gb | 98.34% | 94.97% | 42.86% | 96.86% | 92.52% | 3.04% | 4.44% |
YP1_2 | 23,961,907 | 23,550,226 | 7.07Gb | 97.64% | 93.25% | 42.59% | 96.28% | 91.83% | 3.50% | 4.67% |
YP1_3 | 24,090,997 | 23,756,749 | 7.13Gb | 98.29% | 94.86% | 42.99% | 96.91% | 92.81% | 2.63% | 4.57% |
YP2_1 | 22,458,101 | 22,064,401 | 6.62Gb | 98.17% | 94.55% | 42.76% | 96.62% | 91.86% | 3.51% | 4.63% |
YP2_2 | 26,322,924 | 25,933,325 | 7.78Gb | 98.35% | 94.97% | 42.59% | 96.82% | 92.08% | 3.38% | 4.54% |
YP2_3 | 28,597,224 | 28,207,492 | 8.46Gb | 98.41% | 95.20% | 42.69% | 96.79% | 92.28% | 3.20% | 4.52% |
YP3_1 | 31,454,462 | 30,971,613 | 9.29Gb | 98.38% | 95.09% | 42.53% | 96.88% | 91.66% | 3.60% | 4.74% |
YP3_2 | 24,607,612 | 24,122,774 | 7.24Gb | 98.40% | 95.15% | 42.66% | 96.74% | 92.41% | 3.38% | 4.21% |
YP3_3 | 28,119,471 | 27,654,238 | 8.30Gb | 98.30% | 94.91% | 42.64% | 96.8% | 91.74% | 3.51% | 4.75% |
YP4_1 | 26,766,950 | 26,483,040 | 7.94Gb | 97.99% | 93.86% | 42.82% | 96.88% | 92.44% | 2.94% | 4.62% |
YP4_2 | 27,739,079 | 27,271,759 | 8.18Gb | 98.21% | 94.65% | 42.55% | 96.5% | 91.63% | 3.75% | 4.62% |
YP4_3 | 27,486,903 | 27,022,147 | 8.11Gb | 98.34% | 94.99% | 42.80% | 96.83% | 92.15% | 3.38% | 4.47% |
P1_1 | 24,810,744 | 24,372,086 | 7.31Gb | 98.22% | 94.70% | 42.69% | 96.67% | 91.33% | 3.55% | 5.11% |
P1_2 | 26,317,484 | 25,820,278 | 7.75Gb | 98.34% | 95.01% | 42.15% | 96.9% | 91.97% | 1.87% | 6.17% |
P1_3 | 25,737,276 | 25,343,570 | 7.60Gb | 98.08% | 94.30% | 42.69% | 96.61% | 91.70% | 3.34% | 4.96% |
P2_1 | 25,958,754 | 25,582,291 | 7.67Gb | 98.20% | 94.68% | 42.67% | 96.24% | 91.62% | 3.48% | 4.90% |
P2_2 | 25,124,353 | 24,744,388 | 7.42Gb | 98.30% | 94.90% | 42.87% | 96.89% | 92.12% | 3.23% | 4.65% |
P2_3 | 25,010,070 | 24,633,309 | 7.39Gb | 98.09% | 94.39% | 42.77% | 96.75% | 91.87% | 2.95% | 5.19% |