Skip to main content

Table 3 Physical properties of identified β-defensin peptides

From: The Komodo dragon (Varanus komodoensis) genome and identification of innate immunity genes and clusters

Defensin domain

Length

Molecular weight

Cys Residue Spacing

Charge

Isoelectric point

VkBD1_VARKO

41

4816.46

6–3–9-6

4.5

7.9826

VkBD2_VARKO

44

4770.49

6–4–9-6

4

8.5177

VkBD3_VARKO

68

7510.69

6–4–9-6

-1

5.635

VkBD4_VARKO

48

5466.13

6–4–9-6

−0.5

6.1876

VkBD5_VARKO

45

5112.8

6–4–9-6

4.5

8.5056

VkBD6_VARKO

70

7548.7

6–4–9-7-7 − 5

4.5

7.9825

VkBD7_VARKO

83

8922.43

6–6–8-5/6–6–7-5

6

8.2233

VkBD8_VARKO

39

3850.54

6–6–7-5

2.5

7.9391

VkBD9_VARKO

46

5087.15

6–6–9-5

7.5

9.7437

VkBD10_VARKO

49

5346.37

6–6–7-5

0.5

6.8341

VkBD11_VARKO

40

4130.68

6–7–9-5

-5

3.8346

VkBD12_VARKO

61

7362.5

6–6–12-7

6

9.0239

VkBD13_VARKO

56

6373.34

6–6–12-7

2

7.9229

VkBD14_VARKO

53

6051.22

6–6–12-7

9.5

10.3828

VkBD15_VARKO

42

4598.66

6–6–9-6

9.5

10.246

VkBD16_VARKO

54

5598.25

6–2–3-10-3-3

2

7.796

VkBD17_VARKO

47

5538.28

6–2–3-9-3-3

6

8.4828

VkBD18_VARKO

50

5606.31

6–2–3-10-3-3

2.5

7.512

VkBD19_VARKO

52

5871.76

7–6–10-7

−0.5

5.6992

VkBD20_VARKO

43

4861.77

1–3–9-7

2

7.9237

VkBD21_VARKO

38

4009.73

6–4–9-5

6.5

9.1233

VkBD22_VARKO

42

4645.55

6–4–9-5

4.5

8.5176

VkBD23_VARKO

104

11,026.09

6–4–9-6

−3

4.6839

VkBD24_VARKO

48

5012.86

7–4–9-6

3.5

8.2461

VkBD25_VARKO

42

4575.41

6–4–9-5

3.5

8.2423

VkBD26_VARKO

44

4914.62

6–4–11-5

−3

4.2446

VkBD27_VARKO

41

4535.29

6–4–10 − 5

7

9.6914

VkBD28_VARKO

45

4618.16

6–4–9-6

0

5.9979

VkBD29_VARKO

44

4958.8

6–7–9-5

4.5

8.5135

VkBD30_VARKO

44

4538.29

6–8–9-5

0

6.0306

VkBD31_VARKO

44

5009.92

6–7–10-5

3

8.1509

VkBD32_VARKO

41

4339.01

6–4–9-5

3.5

8.1572

VkBD33_VARKO

44

4782.74

6–4–9-5

8.5

10.5052

VkBD34_VARKO

84

9330.95

7–4–9-5/7–4–9-5

4.5

8.0587

VkBD35_VARKO

47

5058.7

6–5–9-5

-5

3.9254

VkBD36_VARKO

48

5026.65

6–5–9-5

−8

3.371

VkBD37_VARKO

43

4702.36

6–4–9-5

−1

4.7382

VkBD38_VARKO

44

5172.09

6–4–10-6

2.5

7.9416

VkBD39_VARKO

111

11,483.56

6–4–9-5/6–4–9-5/6–4–9-5

5

7.86

VkBD40_VARKO

43

4914.68

6–4–9-5

2.5

7.9327

VkBD41_VARKO

41

4641.48

6–4–8-5

3.5

7.9625

VkBD42_VARKO

42

4717.47

6–4–8-5

5.5

8.8017

VkBD43_VARKO

74

7874.1

6–4–9-5/6–4–9-5

2.5

7.65

VkBD44_VARKO

45

5073.96

6–4–9-5

5

8.5147

VkBD45_VARKO

38

4229.98

6–3–9-5

8

9.7441

VkBD46_VARKO

40

4388.17

6–4–9-5

9.5

10.8323

VkBD47_VARKO

44

5072.96

6–4–10-5

6.5

9.154

VkBD48_VARKO

52

5934.01

6–4–9-5

13

11.9504

VkBD49_VARKO

40

4566.32

6–4–9-5

5.5

8.814

VkBD50_VARKO

42

4627.4

6–4–9-5

7

10.4698

VkBD51_VARKO

40

4467.32

6–4–9-5

9

11.3419

VkBD52_VARKO

40

4623.65

6–4–9-5

8

11.1693

VkBD53_VARKO

40

4537.41

6–4–9-5

10

11.9738

VkBD54_VARKO

42

4760.65

6–4–9-5

11

12.1412

VkBD55_VARKO

56

6092.22

6–2–9-6

6.5

8.7963

VkBD56_VARKO

44

5031.94

3–4–8-5

8.5

9.2085

VkBD57_VARKO

40

4852.66

6–4–9-5

8.5

9.9206

VkBD58_VARKO

44

5254.16

6–7–8-5

6.5

8.8379

VkBD59_VARKO

40

4369.02

6–4–9-5

5.5

8.6986

VkBD60_VARKO

44

5232

6–4–10-5

6.5

8.6105

VkBD61_VARKO

44

5146.91

6–4–9-6

7

9.5242

VkBD62_VARKO

43

4829.59

3–10–16-6

7.5

9.1865

VkBD79_VARKO

49

5260.29

6–4–9-6

4

8.2526

VkBD80a_VARKO

45

5112.96

6–4–9-6

5.5

8.5212

VkBD80b_VARKO

45

5166

6–4–9-6

6.5

9.0493

VkBDic1_VARKO

44

5069.05

6–4–9-5

10

10.3026

  1. Molecular weights, charges and isoelectric points were calculated based on predicted peptide sequences using the EMBOSS tool pepstats [53]
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us