Table 4 List of C4-photosynthesis, photorespiration, and phenylpropanoid-monolignol pathway-related genes associated with H3K9me2 and H4K12ac modifications in switchgrass genotypes AP13 and VS16
Genes Identified | Number of genes | |||
|---|---|---|---|---|
H3K9me2 | H4K12ac | |||
AP13 | VS16 | AP13 | VS16 | |
C4-Related Photosynthetic Genes | ||||
 Tonoplast Dicarboxylate Transporter (DIT) | 17 | 1 | 4 | 2 |
 Phosphoenolpyruvate (PEP) | 19 | 15 | 20 | 0 |
 Phosphoenolpyruvate Carboxylase (PEPC) | 9 | 9 | 10 | 10 |
 Bile Acid Sodium Symporter/Pyruvate Transporter (BASS) | 4 | 2 | 3 | 1 |
 Carbonic Anhydrase (CA) | 6 | 5 | 9 | 2 |
 NADP-Dependent Oxidoreductase | 11 | 3 | 0 | 0 |
 Phosphoenolpyruvate Carboxykinase (PEP-CK) | 1 | 0 | 0 | 1 |
 Thiophosphate Isomerase | 0 | 2 | 0 | 4 |
Photorespiration-Related Genes | ||||
 2-Oxoglutarate (2-OG) | 100 | 57 | 91 | 96 |
 Glutamate | 59 | 46 | 49 | 61 |
 3-Phosphoglycerate (3-PGA) | 6 | 2 | 6 | 4 |
 Ribulose 1,5-bisphosphate carboxylase/Oxygenase (RuBisCo) | 4 | 3 | 7 | 5 |
 Glutamine (GLN) | 33 | 18 | 33 | 31 |
 Dicarboxylate Transporter (DIT) | 1 | 2 | 4 | 2 |
 Catalase (CAT) | 2 | 0 | 2 | 4 |
 Glutamate Synthase (GS) | 3 | 4 | 4 | 4 |
Phenylpropanoid-Monolignol Pathway-Related Genes | ||||
 Phenylalanine Ammonia Lyase (PAL) | 11 | 15 | 27 | 4 |
 4-Coumarate:CoA Ligase (4CL) | 4 | 3 | 8 | 2 |
 Hydroxycinnamoyl CoA:Shikimate Hydroxycinnamoyl Transferase (HCT) | 32 | 17 | 32 | 25 |
 Cinnamyl alcohol dehydrogenase (CAD) | 33 | 26 | 42 | 31 |
 Caffeoyl-CoA 3-O-Methyl Transferase (CCoAOMT) | 6 | 1 | 5 | 1 |
 Cinnamate 4-hydroxylase (C4H) | 2 | 1 | 1 | 1 |