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Table 5 List of abiotic and biotic stress-related genes for H3K9me2 and H4K12ac modifications in switchgrass genotypes AP13 and VS16

From: Genome-wide identification of histone methylation (H3K9me2) and acetylation (H4K12ac) marks in two ecotypes of switchgrass (Panicum virgatum L.)

 

Number of genes

H3K9me2

H4K12ac

AP13

VS16

AP13

VS16

Heat Tolerance Genes

 DNAJ heat shock family protein

115

111

126

199

 Heat shock proteins (HSPs)

78

71

91

119

 DNAK-related heat shock proteins

22

19

24

21

 HEAT repeat-containing protein

10

6

11

7

 Heat shock transcription factors

10

22

15

16

Drought Tolerance Genes

 Drought-responsive family protein

5

5

6

7

 DROUGHT SENSITIVE 1

3

3

2

1

 Chloroplast drought-induced stress protein of 32 kDa

1

1

2

1

 Drought-induced 19 protein

5

5

5

7

Salinity Tolerance Genes

 Salt tolerance Zinc finger

3

2

4

2

 Low temperature and salt responsive protein family

3

7

7

2

 Salt tolerance homolog 2

3

2

6

2

Cold Tolerance Genes

 Cold regulated gene 27

2

1

0

1

 Cold, circadian rhythm, and rna binding 2

2

1

2

1

 Cold shock domain protein 1

1

1

1

1

 Soybean gene regulated by cold 2

0

2

0

1

 Cold shock domain protein 3

0

1

0

2

 Cold regulated 314 inner membrane 1

0

1

0

2

 Cold regulated 413 plasma membrane 1

0

1

0

0

 THO complex, subunit 5

0

0

0

1

Flooding Tolerance Genes

 Subtilase family protein

57

28

69

88

 Leucine-rich repeat transmembrane protein kinase

28

25

34

44

 Transducin family protein/WD-40 repeat family protein

19

22

21

46

 Expansin

24

17

21

41

 Adenine nucleotide alpha hydrolase-like superfamily protein

25

13

12

123

Heavy metal Tolerance Genes

 Heavy metal transport/detoxification superfamily protein

58

38

52

40

 Copper transport protein family protein

6

6

6

6

 Heavy metal atpase

3

5

3

3

 Chloroplast-targeted copper chaperone protein

3

3

3

6

 Farneslated protein 3

1

2

5

4

 Farneslated protein 6

1

0

1

0

Disease-Resistance Genes

 NBS-LRR disease resistance protein

68

50

59

96

 LRR-NB-ARC domains-containing disease

44

38

38

66

 NB-ARC domain containing protein

202

215

251

66

 Disease resistance protein (CC_NBS-LRR class)

39

37

35

40

 Disease resistance responsive (dirigent-like protein) family protein

21

18

32

27

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BMC Genomics

ISSN: 1471-2164

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