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Table 2 Characterization of 1 Mb significant genomic windows for internal organ traits in the Embrapa F2 Chicken Resource Population

From: Genome-wide association scan for QTL and their positional candidate genes associated with internal organ traits in chickens

Trait

GGA_Mb1

SNP window (first – last position)1

Number of SNP/ window

Proportion of genetic variance explained by the window

PPA2

LIVP

2_127

rs317047746 - rs317596831

281

1.38

0.38

15_6

rs318148607 - rs313939736

511

0.70

0.47

GIZZWT

1_81

rs316112843 - rs14849734

355

0.82

0.50

1_166

rs15488636 - rs13551715

418

1.67

0.62

1_167

rs14913877 - rs13552288

358

1.36

0.52

1_168

rs318211853 - rs15497155

318

0.63

0.47

1_169

rs315581943 - rs13972577

346

1.57

0.53

4_71

rs317228804 - rs316204639

330

0.66

0.42

4_72

rs16433889 - rs316997412

281

1.51

0.48

4_76

rs15618974 - rs314892344

308

1.88

0.47

18_7

rs312913684 - rs312861933

425

0.53

0.53

21_1

rs16177395 - rs318084617

877

0.56

0.73

GIZZP

1_65

rs317208413 - rs15299359

415

0.73

0.51

1_81

rs316112843 - rs14849734

355

1.14

0.56

1_83

rs317965743 - rs15328274

382

0.58

0.51

12_12

rs316348330 - rs315497876

472

0.57

0.55

18_4

rs315188853 - rs315807623

643

0.57

0.65

18_5

rs312939477 - rs317197824

790

0.79

0.72

18_6

rs313941377 - rs317640358

791

0.91

0.72

18_7

rs312913684 - rs312861933

425

0.71

0.54

28_0

rs313774457 - rs312701176

829

1.03

0.80

28_1

rs14305593 - rs314996946

560

1.15

0.65

28_2

rs313767061 - rs317469562

659

0.53

0.63

LUNGP

1_163

rs314645027 - rs15485042

293

0.57

0.42

INTES

4_71

rs317228804 - rs316204639

330

3.26

0.64

4_72

rs16433889 - rs316997412

281

0.97

0.42

4_73

rs317373306 - rs15617120

284

0.75

0.36

7_34

rs316467562 - rs312928601

411

0.87

0.56

7_36

rs316261866 - rs315360554

257

0.56

0.40

15_11

rs317306003 - rs314017312

473

0.56

0.59

19_6

rs313367474 - rs314881460

602

1.01

0.72

27_3

rs14302748 - rs312772391

820

0.70

0.76

  1. LIVP: liver percentage; GIZZWT: gizzard weight; GIZZP: gizzard percentage; LUNGP: lung percentage; INTES: intestine length
  2. 1Map position based on Gallus_gallus-5.0 assembly (NCBI)
  3. 2Posterior probability of association (PPA) as described by Onteru et al. [30]