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Table 2 Characterization of 1 Mb significant genomic windows for internal organ traits in the Embrapa F2 Chicken Resource Population

From: Genome-wide association scan for QTL and their positional candidate genes associated with internal organ traits in chickens

Trait GGA_Mb1 SNP window (first – last position)1 Number of SNP/ window Proportion of genetic variance explained by the window PPA2
LIVP 2_127 rs317047746 - rs317596831 281 1.38 0.38
15_6 rs318148607 - rs313939736 511 0.70 0.47
GIZZWT 1_81 rs316112843 - rs14849734 355 0.82 0.50
1_166 rs15488636 - rs13551715 418 1.67 0.62
1_167 rs14913877 - rs13552288 358 1.36 0.52
1_168 rs318211853 - rs15497155 318 0.63 0.47
1_169 rs315581943 - rs13972577 346 1.57 0.53
4_71 rs317228804 - rs316204639 330 0.66 0.42
4_72 rs16433889 - rs316997412 281 1.51 0.48
4_76 rs15618974 - rs314892344 308 1.88 0.47
18_7 rs312913684 - rs312861933 425 0.53 0.53
21_1 rs16177395 - rs318084617 877 0.56 0.73
GIZZP 1_65 rs317208413 - rs15299359 415 0.73 0.51
1_81 rs316112843 - rs14849734 355 1.14 0.56
1_83 rs317965743 - rs15328274 382 0.58 0.51
12_12 rs316348330 - rs315497876 472 0.57 0.55
18_4 rs315188853 - rs315807623 643 0.57 0.65
18_5 rs312939477 - rs317197824 790 0.79 0.72
18_6 rs313941377 - rs317640358 791 0.91 0.72
18_7 rs312913684 - rs312861933 425 0.71 0.54
28_0 rs313774457 - rs312701176 829 1.03 0.80
28_1 rs14305593 - rs314996946 560 1.15 0.65
28_2 rs313767061 - rs317469562 659 0.53 0.63
LUNGP 1_163 rs314645027 - rs15485042 293 0.57 0.42
INTES 4_71 rs317228804 - rs316204639 330 3.26 0.64
4_72 rs16433889 - rs316997412 281 0.97 0.42
4_73 rs317373306 - rs15617120 284 0.75 0.36
7_34 rs316467562 - rs312928601 411 0.87 0.56
7_36 rs316261866 - rs315360554 257 0.56 0.40
15_11 rs317306003 - rs314017312 473 0.56 0.59
19_6 rs313367474 - rs314881460 602 1.01 0.72
27_3 rs14302748 - rs312772391 820 0.70 0.76
  1. LIVP: liver percentage; GIZZWT: gizzard weight; GIZZP: gizzard percentage; LUNGP: lung percentage; INTES: intestine length
  2. 1Map position based on Gallus_gallus-5.0 assembly (NCBI)
  3. 2Posterior probability of association (PPA) as described by Onteru et al. [30]