Table 7 Characterization of the seven predicted deleterious SNPs annotated in PCGs for internal organ traits in chickens
Gene Symbol | SNP ID | GGA | Position1 | Amino acid change | SIFT score2 |
|---|---|---|---|---|---|
TNFSF11 | rs312442403 | 1 | 166,510,185 | Arg/Gln | Deleterious low confidence3 (0.03) |
NR4A2 | g.36224286 > C/T | 7 | 36,224,286 | Val/Met | Deleterious (0) |
g.36225242 > G/T | 36,225,242 | Arg/Ser | Deleterious (0) | ||
g.36225278 > C/T | 36,225,278 | Val/Met | Deleterious (0.01) | ||
ITGB4 | rs313279811 | 18 | 4,785,491 | His/Tyr | Deleterious (0.01) |
rs316340790 | 4,787,392 | Asp/Asn | Deleterious (0.04) | ||
rs732847450 | 4,790,177 | Met/Ile | Deleterious (0.03) |