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Table 2 Summary of TF prediction in the salmonids. The table shows the number of predicted TFs in each salmonid species. The second column contains the number of salmonid genes with significant BLAST hits to TFs with associated motifs in the motif databases. The last column contains the number of salmonid genes with both significant BLAST hits to TFs and a CDD Jaccard index ≥ 0.8

From: SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes

Species

No. genes predicted to be TFs

BLAST

BLAST + CDD

Arctic char

2480

2008

Atlantic salmon

2430

2045

Chinook salmon

2737

2194

Coho salmon

2512

2035

Rainbow trout

2761

2235