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Fig. 2 | BMC Genomics

Fig. 2

From: Single Cell Explorer, collaboration-driven tools to leverage large-scale single cell RNA-seq data

Fig. 2

Interactive FeaturePlot. a A t-SNE and UMAP representation from first-trimester placentas with matched maternal blood and decidual cells. Individual pre-labeled cell types are painted in different colors. The function of painting two genes (CD8A and CD3D) highlights the location of CD8 T cell clusters. A 2D plot of circles indicates the proportion of the single positive and double positive cells. b To query a list of genes, a heatmap can be generated after freehand selection of cells of interest. ILC3 cells can be identified using markers including KIT and DLL1

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