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Table 1 API function to retrieve data from database

From: Single Cell Explorer, collaboration-driven tools to leverage large-scale single cell RNA-seq data

Name Function
getAllClstrsByClstrsType retrieve a table of cell barcodes and annotated cell types in a specific map
getNormalizedGeneExpr get normalized counts matrix for genes of interest from specific cell types in a specific map
getAllNormalizedGeneExpr get full normalized gene counts matrix from specific cell types in specific map
getMarkGenesByMapidAndClusterType get annotated marker genes
getMaps get meta data from a specific map
exportAllClstrsByClstrsType export the cell barcodes and annotated cell types of the cells from a specific map into a csv file