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Fig. 1 | BMC Genomics

Fig. 1

From: Mitochondrial genomic variation drives differential nuclear gene expression in discrete regions of Drosophila gene and protein interaction networks

Fig. 1

Experiment design and DGRP-315 differentially expressed (DE) gene numbers. The cartoon phylogeny in (a) describes the two D. melanogaster (D. mel) haplotypes, and the two D. simulans (D. sim) haplotypes. Branch lengths are not proportional to the degree of divergence. Numbers of non-synonymous SNPs among the haplotypes are reported in the bottom section of (a) in light blue. Numbers of total genome-wide SNP substitutions (excluding the AT-rich control region) are shown in the top part of the figure in pink. Pairwise contrasts: the numbers of DE genes (FDR < 0.05) in each pairwise haplotype contrast are shown in (b). Female contrasts are shown in violet (bottom of plot). Male contrasts are shown in the top part in dark blue. Numbers of DE genes (FDR < 0.05) determined by analysis of deviance-type analyses are shown for ΔmtDNA ‘haplotype’ (c) and ΔmtDNA ‘species’ (d)

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BMC Genomics

ISSN: 1471-2164

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