Table 1 Genes involved in flowering time, transport, photosynthesis and defence in Fe-deficient and infected plants
From: ‘Candidatus Phytoplasma solani’ interferes with the distribution and uptake of iron in tomato
SGN locus | NCBI Gene ID | NCBI description / 1st blastp hit / 2nd blastp hit | Fold-change | Total FPKM |
|---|---|---|---|---|
-Fe/H vs + Fe/H | Upregulated | |||
Solyc12g006770 | #N/D | 75.2 | 405.5 | |
Solyc12g006750 | #N/D | nan | 271.1 | |
Solyc11g012700 | 101265194 | Oligopeptide transporter 3 | 4.8 | 207.9 |
Solyc10g079680 | 101258211 | Putative transcription factor SlbHLH068 | nan | 33.1 |
-Fe/H vs + Fe/H | Downregulated | |||
Solyc06g050980 | 104647958 | Ferritin-1, chloroplastic | 7.0 | 306.6 |
Solyc09g011080 | 101250725 | Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic | 7.4 | 192.4 |
Solyc01g102610 | 101246763 | Ferric reduction oxidase 6 | 5.5 | 168.1 |
Solyc01g079150 | 101260863 | Boron transporter 1 | 4.2 | 65.7 |
Solyc04g071165 | 101264000 | Ref|XP_004237778.1| PREDICTED: vacuolar iron transporter homolog 1-like [S.l.] | 6.8 | 25.1 |
Solyc02g088240 | 101247877 | Ref|XP_004232204.1| PREDICTED: phosphate transporter PHO1 homolog 3 [S.l.] | 9.2 | 22.6 |
Solyc07g045185 | 101267825 | Ref|XP_004243599.1| PREDICTED: zinc finger protein CONSTANS-LIKE 10 [S.l.] | 10.0 | 22.1 |
Solyc07g045180 | 101267825 | Ref|XP_004243599.1| PREDICTED: zinc finger protein CONSTANS-LIKE 10 [S.l.] | 11.4 | 19.6 |
Solyc06g051680 | Ref|XP_009629950.1| PREDICTED: protein EARLY FLOWERING 4-like [N.t.] | 5.3 | 19.2 | |
Solyc04g051180 | Ref|XP_015072233.1| PREDICTED: vacuolar iron transporter homolog 1-like [S.p.] | 5.8 | 15.5 | |
Solyc03g007030 | 101244055 | CDGSH iron-sulfur domain-containing protein | 7.6 | 15.5 |
Solyc09g082550 | 101253320 | Sulfate transporter 3.1-like | 9.2 | 12.9 |
Solyc01g104780 | 101246768 | Vacuolar iron transporter homolog 4-like | 11.3 | 10.8 |
Solyc02g093590 | 101256821 | Zinc finger protein CONSTANS-LIKE 16 | 5.7 | 10.0 |
I/+Fe vs H/+Fe | Upregulated | |||
Solyc06g051680 | Ref|XP_009629950.1| PREDICTED: protein EARLY FLOWERING 4-like [N.t.] | 4.5 | 89.11 | |
Solyc11g066130 | 543971 | osmotin-like protein | 5.2 | 18.8 |
Solyc07g007760 | 101263826 | defensin-like protein | 4.9 | 1534.2 |
Solyc02g082920 | 544149 | chitinase, CHI3 | 3.1 | 1365.6 |
Solyc10g055810 | 544148 | chitinase, CHI9 | 2.8 | 453.7 |
Solyc02g082930 | 544147 | chitinase, CHI17 | 1.7 | 103.1 |
Solyc10g055800 | 101267358 | endochitinase 4 | 3.0 | 289.2 |
Solyc05g050130 | 101253788 | acidic endochitinase | 2.6 | 305.4 |
Solyc00g174340 | 544123 | pathogenesis-related leaf protein 6, PR1B1 | 2.1 | 4507.3 |
Solyc09g007010 | 544185 | pathogenesis-related protein P4 | 1.9 | 152.3 |
Solyc08g080650 | 544082 | osmotin-like protein OSML13 | 2.4 | 719.1 |
I/+Fe vs H/+Fe | Downregulated | |||
Solyc10g086580 | Ref|XP_010312360.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic LOC101249777 | 9.0 | 3523.3 | |
Solyc06g054270 | 101261239 | Sugar transport protein 8-like | 9.9 | 297.4 |
Solyc09g090570 | 101262255 | Protein PROTON GRADIENT REGULATION 5, chloroplastic | 18.8 | 229.3 |
Solyc06g073180 | 778334 | CONSTANS interacting protein 1 | 16.3 | 220.1 |
Solyc09g011080 | 101250725 | Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic | 209.3 | 170.3 |
Solyc01g080870 | 101250924 | Protein NRT1/ PTR FAMILY 7.3 | 13.3 | 152.0 |
Solyc01g102610 | 101246763 | Ref|XP_004230384.1| PREDICTED: ferric reduction oxidase 6-like [S.l.] | 42.4 | 145.5 |
Solyc02g089540 | 778253 | CONSTANS 1;CO1;ortholog | 66.2 | 60.2 |
Solyc01g079150 | 101260863 | Ref|XP_004229368.1| PREDICTED: boron transporter 1 [S.l.] | 69.4 | 53.7 |
Solyc07g053140 | 101265452 | Ref|XP_004243424.1| PREDICTED: zinc finger protein CONSTANS-LIKE 4-like [S.l.] | 33.9 | 38.4 |
Solyc08g077170 | 101263538 | Ref|XP_004245877.1| PREDICTED: protein NRT1/ PTR FAMILY 7.3 [S.l.] | 42.5 | 19.9 |
Solyc12g005660 | 101055534 | Hop-interacting protein THI121 | 13.1 | 19.9 |
Solyc05g010060 | 101244953 | Phosphate transporter PHO1 homolog 1 | 10.8 | 13.3 |
Solyc04g050440 | 544110 | Ammonium transporter | 19.1 | 13.2 |
Solyc05g024260 | 101255592 | Bidirectional sugar transporter N3 | 20.1 | 12.4 |
Solyc09g082550 | 101253320 | Ref|XP_004247591.1| PREDICTED: sulfate transporter 3.1-like [S.l.] | 41.5 | 11.9 |
Solyc04g072740 | 101245940 | Low affinity sulfate transporter 3 | 10.2 | 10.8 |