BTA | Position (bp) | RefSNP id | Annotation | MAF | Effect allele | Ancestral allele | P value | VEBV | iHS | Trait category | Candidate gene(s) |
---|---|---|---|---|---|---|---|---|---|---|---|
3 | 120,211,603 | rs109854637 | Intergenic | 0.34 | A | A | 1.02 × 10 − 11 | 0.028 | – | body conformation | – |
5 | 31,524,629 | rs110940367 | Downstream gene | 0.36 | G | G | 3.18 × 10−27 | 0.030 | −1.65 | body conformation | – |
5 | 93,945,655 | rs134637616 | Intron | 0.26 | C | C | 1.35 × 10−43 | 0.128 | 1.35 | milk production | MGST1 |
6 | 87,005,244 | rs135679764 | Intron | 0.18 | G | – | 1.87 × 10−15 | 0.041 | – | milk production | Casein genes |
6 | 90,486,780 | rs41654962 | Intergenic | 0.20 | G | G | 2.35 × 10−37 | 0.088 | 2.49 | body conformation, milking speed | RASSF6 |
11 | 103,302,351 | rs110186753 | Intron | 0.33 | G | – | 6.64 × 10−10 | 0.020 | – | milk production | PAEP |
14 | 2,534,899 | rs109673915 | Intron | 0.25 | G | G | 1.33 × 10−16 | 0.045 | – | milk production | GPIHBP1 |
17 | 62,697,699 | rs137563207 | Intergenic | 0.24 | C | C | 2.35 × 10−37 | 0.042 | 0.19 | body conformation | TBX5, RBM19 |
20 | 29,987,376 | rs133636599 | Intergenic | 0.14 | A | C | 8.24 × 10−9 | 0.033 | 1.21 | milk production | GHR |
21 | 913,715 | rs108992215 | Intergenic | 0.15 | A | – | 1.30 × 10−27 | 0.042 | – | calving | MAGEL2 |
25 | 1,455,150 | rs133315098 | Intergenic | 0.44 | A | A | 9.72 × 10−33 | 0.046 | – | body conformation, calving, longevity | IGFALS |
26 | 22,133,617 | rs42088986 | Intron | 0.24 | A | A | 8.59 × 10−16 | 0.035 | −0.57 | body conformation | BTRC |