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Table 1 The Pearson correlation coefficients between the rankings of quality scores yielded from dnAQET and QUAST-LG and the rankings of the reference genome builds by hypothesis

From: dnAQET: a framework to compute a consolidated metric for benchmarking quality of de novo assemblies

  Human Mouse Rat Chimpanzee Zebrafish
1. dnAQET Score 1.00 1.00 1.00 1.00 0.98
2. Genome fraction (%) 1.00 1.00 1.00 1.00 0.95
3. Total aligned length 0.97 0.99 0.94 0.94 0.75
4. # indels per 100 kbp 1.00 0.95 1.00 0.66 0.98
5. # mismatches per 100 kbp 0.99 0.99 1.00 0.49 0.98
6. NA50 1.00 0.96 1.00 0.43 0.97
7. LA50 1.00 0.96 1.00 0.43 0.97
8. # scaffold gap ext. mis. 0.99 0.96 0.94 0.43 0.97
9. # N’s per 100 kbp 0.89 0.99 0.43 1.00 0.82
10. # misassemblies 1.00 0.96 0.83 0.26 0.90
11. # local misassemblies 0.99 0.99 0.94 0.09 0.88
12. Unaligned length 0.98 0.96 1.00 0.09 0.83
13. Misass. contigs length 0.73 0.41 0.26 0.60 −0.22
14. Total length −0.64 0.36 0.54 −0.60 0.70