From: dnAQET: a framework to compute a consolidated metric for benchmarking quality of de novo assemblies
 | Human | Mouse | Rat | Chimpanzee | Zebrafish |
---|---|---|---|---|---|
1. dnAQET Score | 1.00 | 1.00 | 1.00 | 1.00 | 0.98 |
2. Genome fraction (%) | 1.00 | 1.00 | 1.00 | 1.00 | 0.95 |
3. Total aligned length | 0.97 | 0.99 | 0.94 | 0.94 | 0.75 |
4. # indels per 100 kbp | 1.00 | 0.95 | 1.00 | 0.66 | 0.98 |
5. # mismatches per 100 kbp | 0.99 | 0.99 | 1.00 | 0.49 | 0.98 |
6. NA50 | 1.00 | 0.96 | 1.00 | 0.43 | 0.97 |
7. LA50 | 1.00 | 0.96 | 1.00 | 0.43 | 0.97 |
8. # scaffold gap ext. mis. | 0.99 | 0.96 | 0.94 | 0.43 | 0.97 |
9. # N’s per 100 kbp | 0.89 | 0.99 | 0.43 | 1.00 | 0.82 |
10. # misassemblies | 1.00 | 0.96 | 0.83 | 0.26 | 0.90 |
11. # local misassemblies | 0.99 | 0.99 | 0.94 | 0.09 | 0.88 |
12. Unaligned length | 0.98 | 0.96 | 1.00 | 0.09 | 0.83 |
13. Misass. contigs length | 0.73 | 0.41 | 0.26 | 0.60 | −0.22 |
14. Total length | −0.64 | 0.36 | 0.54 | −0.60 | 0.70 |