Fig. 2

MAH lineages in global MAH population. a Complete linkage clustering of 125 isolates based on genetic linkage. The distance is based on 1 – PSA (see main text). Isolate names are shown as a distinct color per lineage, b Visualization of recent imports inferred by fastGEAR [32]. Color of the chromosomal chunks indicates donor lineage of the chunk, c Recombination intensity inferred by OrderedPainting [33]. Recombination-cold regions are shown s horizontal bars, d Genomic location of known and new marker genes. Red: VNTR locus, Blue: genes used in SNP-based typing. Marker gene information was collected from [16, 24, 34]