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Table 2 CAZymes involved in plant cell wall degradation

From: Genomic characteristics and comparative genomics analysis of the endophytic fungus Sarocladium brachiariae

Substrates

Family

S. brachiariae

S. oryzae

Copy number

Secreated copy number

Copy number

Secreated copy number

Cellulose

GH1

4

1

5

1

GH3

29

4

27

5

GH5

20

8

23

9

GH12

14

3

8

3

GH45

1

1

2

2

GH6

4

3

4

2

GH7

7

7

7

7

GH74

1

1

1

1

hemicellulose

GH10

5

3

6

2

GH11

10

9

10

9

GH30

11

3

9

1

GH115

2

0

1

0

GH27

6

3

6

2

GH29

0

2

4

2

GH35

3

1

3

1

GH36

16

0

13

0

GH39

0

2

7

3

GH51

2

0

2

0

GH53

2

2

1

1

GH54

6

4

3

3

GH62

3

3

1

1

GH67

2

1

2

1

GH93

6

1

6

1

GH43

44

12

45

9

Pectin

GH105

2

1

4

1

GH28

16

3

16

2

GH78

10

0

6

0

GH88

2

0

2

0

PL1

6

4

6

3

PL3

2

2

2

2

PL4

7

1

5

0

Total number

 

243

85

237

74

  1. Abbreviations: GH, glycoside hydrolase; PL, polysaccharide lyase
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BMC Genomics

ISSN: 1471-2164

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