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Table 1 Statistics of output sequencing in Clerodendrum inerme

From: RNA-Seq analysis of Clerodendrum inerme (L.) roots in response to salt stress

Samples

Reads (No.)

Clean reads (No.)

Bases (bp)

Clean data (bp)

N (%)

Q20 (%)

0 h-1

60,802,270

60,008,714

9,120,340,500

8,912,712,572

0.00139

97.57

0 h-2

57,493,894

56,789,814

8,624,084,100

8,431,598,540

0.001364

97.69

0 h-3

56,866,282

55,934,266

8,529,942,300

8,313,133,758

0.002491

96.21

6 h-1

55,327,066

54,686,334

8,299,059,900

8,098,537,576

0.001451

97.79

6 h-2

55,683,662

55,033,118

8,352,549,300

8,155,979,860

0.001475

97.8

6 h-3

58,976,774

58,281,832

8,846,516,100

8,646,526,566

0.001437

97.73

24 h-1

60,813,298

60,098,036

9,121,994,700

8,903,035,660

0.001583

97.79

24 h-2

57,868,180

57,194,542

8,680,227,000

8,506,194,364

0.001434

97.72

24 h-3

58,931,324

58,021,340

8,839,698,600

8,634,386,222

0.002948

96.11

72 h-1

55,592,334

54,926,346

8,338,850,100

8,166,663,782

0.001337

97.57

72 h-2

57,207,480

56,526,470

8,581,122,000

8,408,351,478

0.001331

97.53

72 h-3

57,107,008

56,448,116

8,566,051,200

8,386,908,366

0.00143

97.63

  1. Reads (No.) = total number of reads. Clean reads (No.) = number of high quality sequence reads. Bases (bp) = total number of bases. Clean data = number of high quality sequence bases. The Q20 percentage is the proportion of nucleotides with a quality value > 20. N (%) = the proportion of unknown nucleotides in clean reads