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Table 2 65 most highly expressed unigenes (FPKM value > 1000) in G. japonicum teliospores

From: Comparative transcriptomics of Gymnosporangium spp. teliospores reveals a conserved genetic program at this specific stage of the rust fungal life cycle

Transcript_IDa

FPKMb

Lengthc

SPd

Descriptione

Blast gene_ID

c6032_g1

107,637.9

325

no

No hit found

c28236_g2

56,894.52

850

no

Hypothetical protein

TREMEDRAFT_42124

c28242_g1

18,140.33

950

no

Histone

PGTG_00393

c7790_g2

17,703.31

1449

yes

Hypothetical protein

PGTG_17690

c10708_g1

14,201.34

1786

no

No hit found

c11262_g1

13,148.50

1085

no

Secreted protein

MELLADRAFT_95585

c25177_g1

12,430.72

689

no

Hypothetical protein

MELLADRAFT_88098

c11902_g1

11,733.81

2231

no

Hypothetical protein

G7K_1408-t1

c9515_g1

11,376.58

1658

yes

Hypothetical protein

PGTG_17079

c11318_g1

10,971.72

1393

no

Hypothetical protein

PGTG_17690

c22047_g1

9192.39

928

no

Hypothetical protein

PGTG_17334

c14339_g2

9139.16

1015

yes

Hypothetical protein

MELLADRAFT_35323

c2022_g1

8673.68

1414

no

No hit found

c25134_g2

7436.62

2599

yes

Subtilisin protease

MELLADRAFT_88167

c8249_g1

6750.63

1717

yes

Glycoside hydrolase 26

MELLADRAFT_106238

c14040_g1

6614.23

1244

yes

No hit found

c11851_g2

5537.22

1084

no

hypothetical protein

PGTG_19738

c14339_g1

5115.31

502

yes

Hypothetical protein

MELLADRAFT_35323

c2906_g1

4708.21

1667

yes

Hypothetical protein

MELLADRAFT_70656

c9022_g1

4088.89

1023

no

No hit found

c12099_g1

3900.42

2266

no

Hypothetical protein

PGTG_14475

c11851_g1

3684.44

272

no

No hit found

c16092_g2

3622.42

1607

no

No hit found

c10950_g1

3514.04

1732

yes

Secreted protein

MELLADRAFT_73055

c4527_g1

3051.66

4137

no

RAN protein kinase

PGTG_21658

c11948_g1

2965.60

414

no

No hit found

c11347_g1

2690.92

2048

yes

Hypothetical protein

PGTG_02189

c10791_g1

2632.66

1700

no

Hypothetical protein

PGTG_14864

c8994_g1

2612.53

3228

no

Hypothetical protein

PGTG_18470

c16092_g3

2604.10

1283

no

No hit found

c1786_g1

2533.90

1481

no

Hypothetical protein

MELLADRAFT_72697

c19079_g1

2505.70

1036

no

No hit found

c65_g1

2451.47

2298

yes

Hypothetical protein

MELLADRAFT_71192

c18890_g1

2414.35

619

no

Hypothetical protein

MELLADRAFT_88098

c15544_g1

2363.95

1282

no

Hypothetical protein

PGTG_03708

c10611_g1

2345.25

1689

yes

Secreted protein

MELLADRAFT_116225

c18913_g1

2331.34

2594

yes

Hypothetical protein

PGTG_10789

c4594_g1

2182.52

1616

yes

Hypothetical protein

PGTG_00638

c9046_g1

2023.74

2473

yes

Hypothetical protein

MELLADRAFT_73714

c13940_g1

1973.04

226

no

No hit found

c1034_g1

1968.25

465

no

No hit found

c25416_g1

1954.22

1363

no

No hit found

c7866_g1

1908.49

1777

no

Hypothetical protein

PGTG_07040

c28275_g1

1837.78

1927

no

No hit found

c12457_g1

1823.57

1381

no

No hit found

c7873_g1

1793.38

1991

no

Hypothetical protein

MELLADRAFT_49061

c14029_g2

1772.19

2196

no

Hypothetical protein

MELLADRAFT_72270

c12350_g1

1604.07

434

no

Histone

PGTG_01301

c7823_g1

1589.52

1667

no

Hypothetical protein

PGTG_11071

c31399_g1

1589.15

534

no

No hit found

c2267_g1

1524.26

852

yes

No hit found

c13642_g1

1452.79

2299

no

Hypothetical protein

PGTG_15958

c1160_g1

1438.03

3746

no

Hypothetical protein

PGTG_11520

c28418_g1

1422.03

997

no

Hypothetical protein

SPOSA6832_01986

c11513_g1

1290.63

1788

no

No hit found

c1787_g1

1232.38

2535

yes

Hypothetical protein

PGTG_16765

c9470_g1

1195.03

1451

no

No hit found

c25232_g1

1153.14

841

yes

No hit found

c16423_g1

1141.52

2216

no

Hypothetical protein

PGTG_02943

c10746_g1

1138.26

3450

no

Hypothetical protein

HMPREF1120_11008

c2397_g1

1115.61

2748

no

Hypothetical protein

PGTG_02069

c14952_g1

1090.41

4366

no

Hypothetical protein

PGTG_17785

c14366_g1

1050.03

3670

no

Cyclin B

PGTG_13538

c6040_g1

1043.71

2004

yes

Hypothetical protein

PGTG_00770

c10606_g1

1014.47

1166

no

No hit found

  1. a Identity of transcript assembled from G. japonicum teliospores RNA-seq data
  2. b Average fragments per kb of exon model per million reads mapped value of unigenes from each cDNA library
  3. c Unigene length in nucleotides
  4. d Predicted secreted proteins
  5. e Functional annotation according to homology in the NCBI non-redundant database (best blastp hit)