Table 1 The number of read pairs prior and after trimming
Sample | Raw paired-end reads | Trimmed paired-end reads |
|---|---|---|
Control 1 | 46,497,004 | 44,697,960 (96.13%) |
Control 2 | 43,309,253 | 41,651,586 (96.17%) |
Control 3 | 40,571,354 | 38,896,140 (95.87%) |
Control 4 | 42,111,175 | 40,566,032 (96.33%) |
Control 5 | 47,098,377 | 45,404,272 (95.63%) |
Control 6 | 38,519,779 | 36,568,513 (94.93%) |
Infected 1 | 44,325,031 | 42,803,756 (96.57%) |
Infected 2 | 46,902,950 | 45,238,551 (96.45%) |
Infected 3 | 49,289,659 | 47,443,959 (96.26%) |
Infected 4 | 39,687,853 | 38,299,205 (96.50%) |
Infected 5 | 33,036,002 | 31,758,938 (96.13%) |
Infected 6 | 50,947,705 | 48,935,511 (96.05%) |
Total reads | 522,296,142 | 501,900,423 (96.09%) |