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Table 5 Comparison of fold change in transcript abundance between qRT-PCR and RNAseq

From: Transcriptomic analysis of Macrobrachium rosenbergii (giant fresh water prawn) post-larvae in response to M. rosenbergii nodavirus (MrNV) infection: de novo assembly and functional annotation

Gene symbol

qRT-PCR

RNAseq

Fold change ± SD

P

Fold change

Corrected P

ALF1

5.86 ± 0.72

0.001

2.25

0.011

CuZnSOD3

−5.72 ± 1.09

0.003

−13.45

0.001

Anv

8.97 ± 1.19

0.001

2.48

0.007

Spz

−3.26 ± 1.08

0.053

−17.88

2.90E-09

CASP

12.05 ± 0.91

7.04E-05

2.64

1.03E-06

DICER

6.81 ± 1.32

0.006

3.66

4.31E-11

HMCN1

16.07 ± 3.91

0.005

5.31

0.003

ARF

5.45 ± 0.90

0.004

2.19

0.008

ProPO

9.38 ± 1.43

0.002

2.01

8.65E-06

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BMC Genomics

ISSN: 1471-2164

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